Hb_000963_090

Information

Type rubber biosynthesis
Description Gene Name: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
Location Contig963: 62005-68829
Sequence    

Annotation

kegg
ID vvi:100257071
description 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, chloroplastic
nr
ID BAF98296.1
description 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Hevea brasiliensis]
swissprot
ID F4K0E8
description 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic OS=Arabidopsis thaliana GN=ISPG PE=1 SV=1
trembl
ID A9ZN14
description 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Hevea brasiliensis GN=HbHDS PE=2 SV=1
Gene Ontology
ID GO:0009941
description 4-hydroxy-3-methylbut-2-en-1-yl diphosphate chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63825: 62057-66050 , PASA_asmbl_63826: 66051-67757 , PASA_asmbl_63827: 67758-68291
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000963_090 0.0 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Hevea brasiliensis]
2 Hb_010632_010 0.1159415535 - - PREDICTED: bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid aminotransferase, mitochondrial [Jatropha curcas]
3 Hb_078477_060 0.119299223 - - PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
4 Hb_000329_080 0.1205985646 - - PREDICTED: transketolase, chloroplastic [Jatropha curcas]
5 Hb_002811_190 0.1213713145 - - tRNA pseudouridine synthase d, putative [Ricinus communis]
6 Hb_001811_080 0.1229178795 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
7 Hb_001080_150 0.1303726458 - - PREDICTED: Niemann-Pick C1 protein-like [Jatropha curcas]
8 Hb_001425_010 0.1309967294 - - sugar transporter, putative [Ricinus communis]
9 Hb_008616_040 0.1358498118 - - PREDICTED: RNA-binding protein CP33, chloroplastic [Jatropha curcas]
10 Hb_062013_010 0.1363226762 - - phosphoprotein phosphatase, putative [Ricinus communis]
11 Hb_000163_110 0.1402482667 - - PREDICTED: blue-light photoreceptor PHR2 [Jatropha curcas]
12 Hb_000997_290 0.1410172521 - - PREDICTED: acylamino-acid-releasing enzyme [Jatropha curcas]
13 Hb_052946_010 0.1437782824 - - PREDICTED: uncharacterized protein LOC105639103 [Jatropha curcas]
14 Hb_010984_010 0.1444585596 - - PREDICTED: translation factor GUF1 homolog, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_159809_090 0.1485369409 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Hevea brasiliensis]
16 Hb_001195_370 0.1493235624 - - -
17 Hb_000977_150 0.1498401622 - - latex cyanogenic beta glucosidase [Hevea brasiliensis]
18 Hb_000803_220 0.1511049848 - - PREDICTED: magnesium-chelatase subunit ChlD, chloroplastic [Jatropha curcas]
19 Hb_001080_030 0.151369326 - - AMP dependent ligase, putative [Ricinus communis]
20 Hb_000731_290 0.15278061 - - ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_000963_090 Hb_000963_090 Hb_010632_010 Hb_010632_010 Hb_000963_090--Hb_010632_010 Hb_078477_060 Hb_078477_060 Hb_000963_090--Hb_078477_060 Hb_000329_080 Hb_000329_080 Hb_000963_090--Hb_000329_080 Hb_002811_190 Hb_002811_190 Hb_000963_090--Hb_002811_190 Hb_001811_080 Hb_001811_080 Hb_000963_090--Hb_001811_080 Hb_001080_150 Hb_001080_150 Hb_000963_090--Hb_001080_150 Hb_001365_020 Hb_001365_020 Hb_010632_010--Hb_001365_020 Hb_000163_110 Hb_000163_110 Hb_010632_010--Hb_000163_110 Hb_000853_050 Hb_000853_050 Hb_010632_010--Hb_000853_050 Hb_001425_010 Hb_001425_010 Hb_010632_010--Hb_001425_010 Hb_010632_020 Hb_010632_020 Hb_010632_010--Hb_010632_020 Hb_000014_190 Hb_000014_190 Hb_078477_060--Hb_000014_190 Hb_003077_130 Hb_003077_130 Hb_078477_060--Hb_003077_130 Hb_001080_030 Hb_001080_030 Hb_078477_060--Hb_001080_030 Hb_078477_060--Hb_001080_150 Hb_001793_030 Hb_001793_030 Hb_078477_060--Hb_001793_030 Hb_001365_010 Hb_001365_010 Hb_000329_080--Hb_001365_010 Hb_000329_080--Hb_000163_110 Hb_001195_370 Hb_001195_370 Hb_000329_080--Hb_001195_370 Hb_000300_680 Hb_000300_680 Hb_000329_080--Hb_000300_680 Hb_000329_080--Hb_001811_080 Hb_000977_150 Hb_000977_150 Hb_000329_080--Hb_000977_150 Hb_002811_190--Hb_001425_010 Hb_002811_190--Hb_000977_150 Hb_001405_080 Hb_001405_080 Hb_002811_190--Hb_001405_080 Hb_021409_190 Hb_021409_190 Hb_002811_190--Hb_021409_190 Hb_000640_260 Hb_000640_260 Hb_002811_190--Hb_000640_260 Hb_002811_190--Hb_000329_080 Hb_001811_080--Hb_002811_190 Hb_001811_080--Hb_000163_110 Hb_001811_080--Hb_000977_150 Hb_001811_080--Hb_001365_010 Hb_001080_150--Hb_001195_370 Hb_062013_010 Hb_062013_010 Hb_001080_150--Hb_062013_010 Hb_001080_150--Hb_000329_080 Hb_007933_030 Hb_007933_030 Hb_001080_150--Hb_007933_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.11285 19.2396 29.7998 19.3587 6.71716 7.84311
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.41782 3.05431 3.13475 39.0425 104.657

CAGE analysis