Hb_001080_150

Information

Type -
Description -
Location Contig1080: 107284-126358
Sequence    

Annotation

kegg
ID rcu:RCOM_1601160
description hedgehog receptor, putative
nr
ID XP_012073645.1
description PREDICTED: Niemann-Pick C1 protein-like [Jatropha curcas]
swissprot
ID P56941
description Niemann-Pick C1 protein OS=Sus scrofa GN=NPC1 PE=2 SV=1
trembl
ID B9R8N7
description Hedgehog receptor, putative OS=Ricinus communis GN=RCOM_1601160 PE=4 SV=1
Gene Ontology
ID GO:0005886
description niemann-pick c1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02421: 107060-110556 , PASA_asmbl_02422: 113867-122031 , PASA_asmbl_02423: 110958-118794 , PASA_asmbl_02424: 118910-119618 , PASA_asmbl_02425: 116653-117044 , PASA_asmbl_02426: 122083-125124 , PASA_asmbl_02427: 126103-126233
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001080_150 0.0 - - PREDICTED: Niemann-Pick C1 protein-like [Jatropha curcas]
2 Hb_001195_370 0.1068263166 - - -
3 Hb_062013_010 0.1188127602 - - phosphoprotein phosphatase, putative [Ricinus communis]
4 Hb_000329_080 0.1188256589 - - PREDICTED: transketolase, chloroplastic [Jatropha curcas]
5 Hb_007933_030 0.1237741318 - - PREDICTED: uncharacterized protein LOC105639932 [Jatropha curcas]
6 Hb_000963_090 0.1303726458 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Hevea brasiliensis]
7 Hb_078477_060 0.1329262913 - - PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
8 Hb_001793_030 0.1338671076 - - Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Theobroma cacao]
9 Hb_000731_290 0.1354322475 - - ABC transporter family protein [Hevea brasiliensis]
10 Hb_052946_010 0.1363417672 - - PREDICTED: uncharacterized protein LOC105639103 [Jatropha curcas]
11 Hb_000997_290 0.1472502565 - - PREDICTED: acylamino-acid-releasing enzyme [Jatropha curcas]
12 Hb_008616_040 0.1497310577 - - PREDICTED: RNA-binding protein CP33, chloroplastic [Jatropha curcas]
13 Hb_000019_010 0.1511175165 - - PREDICTED: long chain base biosynthesis protein 2a [Jatropha curcas]
14 Hb_010984_010 0.1519927823 - - PREDICTED: translation factor GUF1 homolog, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_182651_020 0.1531085885 - - alcohol dehydrogenase, putative [Ricinus communis]
16 Hb_008511_140 0.1533247312 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632314 [Jatropha curcas]
17 Hb_003226_190 0.1550230367 - - PREDICTED: blue-light photoreceptor PHR2 [Jatropha curcas]
18 Hb_000529_140 0.1554530623 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000366_030 0.1555545393 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Jatropha curcas]
20 Hb_000997_320 0.1558295206 - - PREDICTED: acylamino-acid-releasing enzyme-like [Malus domestica]

Gene co-expression network

sample Hb_001080_150 Hb_001080_150 Hb_001195_370 Hb_001195_370 Hb_001080_150--Hb_001195_370 Hb_062013_010 Hb_062013_010 Hb_001080_150--Hb_062013_010 Hb_000329_080 Hb_000329_080 Hb_001080_150--Hb_000329_080 Hb_007933_030 Hb_007933_030 Hb_001080_150--Hb_007933_030 Hb_000963_090 Hb_000963_090 Hb_001080_150--Hb_000963_090 Hb_078477_060 Hb_078477_060 Hb_001080_150--Hb_078477_060 Hb_030312_030 Hb_030312_030 Hb_001195_370--Hb_030312_030 Hb_000997_290 Hb_000997_290 Hb_001195_370--Hb_000997_290 Hb_001195_370--Hb_000329_080 Hb_000997_320 Hb_000997_320 Hb_001195_370--Hb_000997_320 Hb_000366_030 Hb_000366_030 Hb_001195_370--Hb_000366_030 Hb_062013_010--Hb_000329_080 Hb_000414_180 Hb_000414_180 Hb_062013_010--Hb_000414_180 Hb_062013_010--Hb_000963_090 Hb_001365_010 Hb_001365_010 Hb_062013_010--Hb_001365_010 Hb_182651_020 Hb_182651_020 Hb_062013_010--Hb_182651_020 Hb_000329_080--Hb_001365_010 Hb_000163_110 Hb_000163_110 Hb_000329_080--Hb_000163_110 Hb_000300_680 Hb_000300_680 Hb_000329_080--Hb_000300_680 Hb_001811_080 Hb_001811_080 Hb_000329_080--Hb_001811_080 Hb_000977_150 Hb_000977_150 Hb_000329_080--Hb_000977_150 Hb_000521_090 Hb_000521_090 Hb_007933_030--Hb_000521_090 Hb_007933_030--Hb_001195_370 Hb_001793_030 Hb_001793_030 Hb_007933_030--Hb_001793_030 Hb_007933_030--Hb_000300_680 Hb_020400_020 Hb_020400_020 Hb_007933_030--Hb_020400_020 Hb_010632_010 Hb_010632_010 Hb_000963_090--Hb_010632_010 Hb_000963_090--Hb_078477_060 Hb_000963_090--Hb_000329_080 Hb_002811_190 Hb_002811_190 Hb_000963_090--Hb_002811_190 Hb_000963_090--Hb_001811_080 Hb_000014_190 Hb_000014_190 Hb_078477_060--Hb_000014_190 Hb_003077_130 Hb_003077_130 Hb_078477_060--Hb_003077_130 Hb_001080_030 Hb_001080_030 Hb_078477_060--Hb_001080_030 Hb_078477_060--Hb_001793_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.08047 4.60759 4.47391 10.3275 2.57313 3.28643
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.54388 1.11986 1.07016 10.4738 29.1019

CAGE analysis