Hb_000014_190

Information

Type -
Description -
Location Contig14: 368107-372520
Sequence    

Annotation

kegg
ID rcu:RCOM_0977430
description Phytoene dehydrogenase, putative (EC:1.14.99.30)
nr
ID XP_002521265.1
description Phytoene dehydrogenase, putative [Ricinus communis]
swissprot
ID P26294
description 15-cis-phytoene desaturase OS=Synechococcus elongatus (strain PCC 7942) GN=pds PE=1 SV=1
trembl
ID B9S5J6
description Phytoene dehydrogenase, putative OS=Ricinus communis GN=RCOM_0977430 PE=4 SV=1
Gene Ontology
ID GO:0016719
description phytoene desaturase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000014_190 0.0 - - Phytoene dehydrogenase, putative [Ricinus communis]
2 Hb_078477_060 0.1087698977 - - PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
3 Hb_003226_190 0.1410355988 - - PREDICTED: blue-light photoreceptor PHR2 [Jatropha curcas]
4 Hb_001080_030 0.1485777559 - - AMP dependent ligase, putative [Ricinus communis]
5 Hb_009620_060 0.1488548608 - - PREDICTED: acetylornithine aminotransferase, mitochondrial-like [Jatropha curcas]
6 Hb_000890_110 0.1528316138 - - PREDICTED: GTP-binding protein OBGC, chloroplastic [Populus euphratica]
7 Hb_000963_090 0.1578674741 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Hevea brasiliensis]
8 Hb_159809_090 0.159040329 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Hevea brasiliensis]
9 Hb_000189_250 0.1635425006 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
10 Hb_000300_310 0.1665796242 - - PREDICTED: uncharacterized protein LOC104896902 [Beta vulgaris subsp. vulgaris]
11 Hb_006856_030 0.1669259288 - - Uridine kinase-like protein 4 [Glycine soja]
12 Hb_166127_030 0.1686294999 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_002671_130 0.1723004601 - - GTP-binding protein typa/bipa, putative [Ricinus communis]
14 Hb_001811_080 0.1738784399 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
15 Hb_003077_130 0.174884861 - - hypothetical protein JCGZ_22476 [Jatropha curcas]
16 Hb_000352_220 0.1759139546 - - PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Jatropha curcas]
17 Hb_024714_080 0.1763770864 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
18 Hb_000069_490 0.1766027314 - - conserved hypothetical protein [Ricinus communis]
19 Hb_168031_020 0.1769876734 - - PREDICTED: uncharacterized protein LOC105646684 isoform X2 [Jatropha curcas]
20 Hb_000495_080 0.1774233287 - - Pentatricopeptide repeat (PPR-like) superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_000014_190 Hb_000014_190 Hb_078477_060 Hb_078477_060 Hb_000014_190--Hb_078477_060 Hb_003226_190 Hb_003226_190 Hb_000014_190--Hb_003226_190 Hb_001080_030 Hb_001080_030 Hb_000014_190--Hb_001080_030 Hb_009620_060 Hb_009620_060 Hb_000014_190--Hb_009620_060 Hb_000890_110 Hb_000890_110 Hb_000014_190--Hb_000890_110 Hb_000963_090 Hb_000963_090 Hb_000014_190--Hb_000963_090 Hb_078477_060--Hb_000963_090 Hb_003077_130 Hb_003077_130 Hb_078477_060--Hb_003077_130 Hb_078477_060--Hb_001080_030 Hb_001080_150 Hb_001080_150 Hb_078477_060--Hb_001080_150 Hb_001793_030 Hb_001793_030 Hb_078477_060--Hb_001793_030 Hb_000352_220 Hb_000352_220 Hb_003226_190--Hb_000352_220 Hb_000495_080 Hb_000495_080 Hb_003226_190--Hb_000495_080 Hb_001405_080 Hb_001405_080 Hb_003226_190--Hb_001405_080 Hb_003124_120 Hb_003124_120 Hb_003226_190--Hb_003124_120 Hb_000640_260 Hb_000640_260 Hb_003226_190--Hb_000640_260 Hb_003226_190--Hb_001080_030 Hb_052946_010 Hb_052946_010 Hb_001080_030--Hb_052946_010 Hb_000731_290 Hb_000731_290 Hb_001080_030--Hb_000731_290 Hb_005695_080 Hb_005695_080 Hb_001080_030--Hb_005695_080 Hb_159809_090 Hb_159809_090 Hb_001080_030--Hb_159809_090 Hb_008511_140 Hb_008511_140 Hb_001080_030--Hb_008511_140 Hb_009620_060--Hb_003226_190 Hb_000189_520 Hb_000189_520 Hb_009620_060--Hb_000189_520 Hb_002671_130 Hb_002671_130 Hb_009620_060--Hb_002671_130 Hb_000032_400 Hb_000032_400 Hb_009620_060--Hb_000032_400 Hb_007904_040 Hb_007904_040 Hb_009620_060--Hb_007904_040 Hb_007002_010 Hb_007002_010 Hb_000890_110--Hb_007002_010 Hb_000683_080 Hb_000683_080 Hb_000890_110--Hb_000683_080 Hb_158144_020 Hb_158144_020 Hb_000890_110--Hb_158144_020 Hb_000038_020 Hb_000038_020 Hb_000890_110--Hb_000038_020 Hb_000890_110--Hb_000352_220 Hb_168031_020 Hb_168031_020 Hb_000890_110--Hb_168031_020 Hb_010632_010 Hb_010632_010 Hb_000963_090--Hb_010632_010 Hb_000329_080 Hb_000329_080 Hb_000963_090--Hb_000329_080 Hb_002811_190 Hb_002811_190 Hb_000963_090--Hb_002811_190 Hb_001811_080 Hb_001811_080 Hb_000963_090--Hb_001811_080 Hb_000963_090--Hb_001080_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.236062 1.37288 1.5574 0.948777 0.54103 0.670852
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.41177 0.653239 0.424893 2.3298 9.52054

CAGE analysis