Hb_000329_080

Information

Type -
Description -
Location Contig329: 37519-41406
Sequence    

Annotation

kegg
ID rcu:RCOM_1611360
description transketolase, putative (EC:2.2.1.1)
nr
ID XP_012083595.1
description PREDICTED: transketolase, chloroplastic [Jatropha curcas]
swissprot
ID F4IW47
description Transketolase-2, chloroplastic OS=Arabidopsis thaliana GN=TKL-2 PE=2 SV=1
trembl
ID A0A067KAE2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14540 PE=4 SV=1
Gene Ontology
ID GO:0004802
description chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34486: 37374-41527
cDNA
(Sanger)
(ID:Location)		 018_C11.ab1: 40764-41333 , 023_I14.ab1: 40994-41325 , 024_I16.ab1: 40800-41400 , 039_C21.ab1: 40818-41340 , 048_G14.ab1: 40161-41340

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_080 0.0 - - PREDICTED: transketolase, chloroplastic [Jatropha curcas]
2 Hb_001365_010 0.0939947434 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
3 Hb_000163_110 0.094427362 - - PREDICTED: blue-light photoreceptor PHR2 [Jatropha curcas]
4 Hb_001195_370 0.1050088576 - - -
5 Hb_000300_680 0.1062793428 - - PREDICTED: uncharacterized protein LOC105632625 isoform X1 [Jatropha curcas]
6 Hb_001811_080 0.1070360531 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
7 Hb_000977_150 0.1102107175 - - latex cyanogenic beta glucosidase [Hevea brasiliensis]
8 Hb_002811_190 0.1111500799 - - tRNA pseudouridine synthase d, putative [Ricinus communis]
9 Hb_000997_290 0.1113000045 - - PREDICTED: acylamino-acid-releasing enzyme [Jatropha curcas]
10 Hb_062013_010 0.1182965354 - - phosphoprotein phosphatase, putative [Ricinus communis]
11 Hb_001080_150 0.1188256589 - - PREDICTED: Niemann-Pick C1 protein-like [Jatropha curcas]
12 Hb_000997_320 0.1200205479 - - PREDICTED: acylamino-acid-releasing enzyme-like [Malus domestica]
13 Hb_000963_090 0.1205985646 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Hevea brasiliensis]
14 Hb_001793_030 0.1353497446 - - Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Theobroma cacao]
15 Hb_005977_060 0.1368631398 - - conserved hypothetical protein [Ricinus communis]
16 Hb_021409_190 0.1371979451 - - PREDICTED: luminal-binding protein 5-like [Jatropha curcas]
17 Hb_007933_030 0.1374828422 - - PREDICTED: uncharacterized protein LOC105639932 [Jatropha curcas]
18 Hb_000441_050 0.1375615117 - - PREDICTED: 187-kDa microtubule-associated protein AIR9 [Jatropha curcas]
19 Hb_003783_050 0.1385393346 - - conserved hypothetical protein [Ricinus communis]
20 Hb_008616_040 0.1385518907 - - PREDICTED: RNA-binding protein CP33, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000329_080 Hb_000329_080 Hb_001365_010 Hb_001365_010 Hb_000329_080--Hb_001365_010 Hb_000163_110 Hb_000163_110 Hb_000329_080--Hb_000163_110 Hb_001195_370 Hb_001195_370 Hb_000329_080--Hb_001195_370 Hb_000300_680 Hb_000300_680 Hb_000329_080--Hb_000300_680 Hb_001811_080 Hb_001811_080 Hb_000329_080--Hb_001811_080 Hb_000977_150 Hb_000977_150 Hb_000329_080--Hb_000977_150 Hb_001365_020 Hb_001365_020 Hb_001365_010--Hb_001365_020 Hb_001365_010--Hb_000163_110 Hb_000441_050 Hb_000441_050 Hb_001365_010--Hb_000441_050 Hb_003783_050 Hb_003783_050 Hb_001365_010--Hb_003783_050 Hb_035834_010 Hb_035834_010 Hb_001365_010--Hb_035834_010 Hb_000163_110--Hb_001365_020 Hb_000163_110--Hb_000441_050 Hb_005977_060 Hb_005977_060 Hb_000163_110--Hb_005977_060 Hb_000163_110--Hb_000300_680 Hb_030312_030 Hb_030312_030 Hb_001195_370--Hb_030312_030 Hb_000997_290 Hb_000997_290 Hb_001195_370--Hb_000997_290 Hb_000997_320 Hb_000997_320 Hb_001195_370--Hb_000997_320 Hb_000366_030 Hb_000366_030 Hb_001195_370--Hb_000366_030 Hb_001080_150 Hb_001080_150 Hb_001195_370--Hb_001080_150 Hb_000616_030 Hb_000616_030 Hb_000300_680--Hb_000616_030 Hb_031330_020 Hb_031330_020 Hb_000300_680--Hb_031330_020 Hb_001916_150 Hb_001916_150 Hb_000300_680--Hb_001916_150 Hb_000975_050 Hb_000975_050 Hb_000300_680--Hb_000975_050 Hb_002811_190 Hb_002811_190 Hb_001811_080--Hb_002811_190 Hb_001811_080--Hb_000163_110 Hb_000963_090 Hb_000963_090 Hb_001811_080--Hb_000963_090 Hb_001811_080--Hb_000977_150 Hb_001811_080--Hb_001365_010 Hb_000032_600 Hb_000032_600 Hb_000977_150--Hb_000032_600 Hb_001054_060 Hb_001054_060 Hb_000977_150--Hb_001054_060 Hb_000977_150--Hb_002811_190 Hb_067664_010 Hb_067664_010 Hb_000977_150--Hb_067664_010 Hb_000977_150--Hb_001195_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.9587 53.5693 99.8827 138.359 17.6199 16.1389
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.4912 15.1139 26.5286 135.524 389.677

CAGE analysis