Hb_001054_060

Information

Type -
Description -
Location Contig1054: 80126-85453
Sequence    

Annotation

kegg
ID rcu:RCOM_0084140
description dihydroorotate dehydrogenase, putative (EC:1.3.1.2)
nr
ID XP_012087617.1
description PREDICTED: dihydropyrimidine dehydrogenase [NADP(+)] [Jatropha curcas]
swissprot
ID Q9LVI9
description Dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic OS=Arabidopsis thaliana GN=PYD1 PE=1 SV=1
trembl
ID A0A067JLS0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25316 PE=4 SV=1
Gene Ontology
ID GO:0005737
description dihydropyrimidine dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01828: 80149-85352
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001054_060 0.0 - - PREDICTED: dihydropyrimidine dehydrogenase [NADP(+)] [Jatropha curcas]
2 Hb_000032_600 0.0815703156 - - PREDICTED: B2 protein [Jatropha curcas]
3 Hb_187959_010 0.0900857421 - - hypothetical protein JCGZ_12266 [Jatropha curcas]
4 Hb_067664_010 0.0902518122 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
5 Hb_000977_150 0.092583351 - - latex cyanogenic beta glucosidase [Hevea brasiliensis]
6 Hb_030312_030 0.1030703832 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40 isoform X1 [Jatropha curcas]
7 Hb_000997_320 0.114036971 - - PREDICTED: acylamino-acid-releasing enzyme-like [Malus domestica]
8 Hb_004007_200 0.1160279232 - - PREDICTED: BTB/POZ domain-containing protein NPY5 [Jatropha curcas]
9 Hb_001195_370 0.1253998536 - - -
10 Hb_003030_010 0.1303253422 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
11 Hb_000313_230 0.1308557518 - - PREDICTED: uncharacterized protein LOC105636893 [Jatropha curcas]
12 Hb_000917_210 0.1310370671 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000622_060 0.1314942663 - - PREDICTED: uncharacterized protein At5g05190-like isoform X1 [Jatropha curcas]
14 Hb_001754_120 0.1333350582 - - PREDICTED: probable protein phosphatase 2C 40 [Jatropha curcas]
15 Hb_178968_080 0.1349212627 - - PREDICTED: serine/threonine-protein kinase OSR1 isoform X2 [Jatropha curcas]
16 Hb_000997_290 0.1349266386 - - PREDICTED: acylamino-acid-releasing enzyme [Jatropha curcas]
17 Hb_000768_150 0.1390816354 - - PREDICTED: glycine-rich protein A3-like [Fragaria vesca subsp. vesca]
18 Hb_000115_360 0.1419435213 - - PREDICTED: probable protein phosphatase 2C 15 isoform X3 [Jatropha curcas]
19 Hb_001916_150 0.1421527643 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-3 [Vitis vinifera]
20 Hb_002518_180 0.1422228993 - - hypothetical protein POPTR_0001s25460g [Populus trichocarpa]

Gene co-expression network

sample Hb_001054_060 Hb_001054_060 Hb_000032_600 Hb_000032_600 Hb_001054_060--Hb_000032_600 Hb_187959_010 Hb_187959_010 Hb_001054_060--Hb_187959_010 Hb_067664_010 Hb_067664_010 Hb_001054_060--Hb_067664_010 Hb_000977_150 Hb_000977_150 Hb_001054_060--Hb_000977_150 Hb_030312_030 Hb_030312_030 Hb_001054_060--Hb_030312_030 Hb_000997_320 Hb_000997_320 Hb_001054_060--Hb_000997_320 Hb_000032_600--Hb_067664_010 Hb_000032_600--Hb_000977_150 Hb_178968_080 Hb_178968_080 Hb_000032_600--Hb_178968_080 Hb_000130_200 Hb_000130_200 Hb_000032_600--Hb_000130_200 Hb_001754_120 Hb_001754_120 Hb_000032_600--Hb_001754_120 Hb_003030_010 Hb_003030_010 Hb_187959_010--Hb_003030_010 Hb_004007_200 Hb_004007_200 Hb_187959_010--Hb_004007_200 Hb_007590_100 Hb_007590_100 Hb_187959_010--Hb_007590_100 Hb_006414_010 Hb_006414_010 Hb_187959_010--Hb_006414_010 Hb_007134_030 Hb_007134_030 Hb_187959_010--Hb_007134_030 Hb_067664_010--Hb_000977_150 Hb_067664_010--Hb_001754_120 Hb_000997_290 Hb_000997_290 Hb_067664_010--Hb_000997_290 Hb_001124_140 Hb_001124_140 Hb_067664_010--Hb_001124_140 Hb_002811_190 Hb_002811_190 Hb_000977_150--Hb_002811_190 Hb_000329_080 Hb_000329_080 Hb_000977_150--Hb_000329_080 Hb_001195_370 Hb_001195_370 Hb_000977_150--Hb_001195_370 Hb_030312_030--Hb_001195_370 Hb_003783_050 Hb_003783_050 Hb_030312_030--Hb_003783_050 Hb_000941_120 Hb_000941_120 Hb_030312_030--Hb_000941_120 Hb_003006_080 Hb_003006_080 Hb_030312_030--Hb_003006_080 Hb_002805_090 Hb_002805_090 Hb_030312_030--Hb_002805_090 Hb_036388_010 Hb_036388_010 Hb_000997_320--Hb_036388_010 Hb_000997_320--Hb_001195_370 Hb_000997_320--Hb_030312_030 Hb_000768_150 Hb_000768_150 Hb_000997_320--Hb_000768_150 Hb_000997_320--Hb_000329_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.21636 19.3313 22.1001 37.5008 0.639084 2.46074
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.8787 5.93409 3.72262 32.2152 62.7745

CAGE analysis