Hb_187959_010

Information

Type -
Description -
Location Contig187959: 36-1252
Sequence    

Annotation

kegg
ID rcu:RCOM_0553180
description carbohydrate transporter, putative
nr
ID KDP31805.1
description hypothetical protein JCGZ_12266 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KHS7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12266 PE=4 SV=1
Gene Ontology
ID GO:0016021
description major facilitator superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_187959_010 0.0 - - hypothetical protein JCGZ_12266 [Jatropha curcas]
2 Hb_003030_010 0.0757359455 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
3 Hb_001054_060 0.0900857421 - - PREDICTED: dihydropyrimidine dehydrogenase [NADP(+)] [Jatropha curcas]
4 Hb_004007_200 0.1096429226 - - PREDICTED: BTB/POZ domain-containing protein NPY5 [Jatropha curcas]
5 Hb_007590_100 0.1151192817 - - PREDICTED: phosphoinositide phospholipase C 4-like [Jatropha curcas]
6 Hb_006414_010 0.1220588343 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 9 [Jatropha curcas]
7 Hb_007134_030 0.1273468526 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
8 Hb_030312_030 0.129131806 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40 isoform X1 [Jatropha curcas]
9 Hb_004032_110 0.1309848806 - - PREDICTED: putative methylesterase 14, chloroplastic [Jatropha curcas]
10 Hb_000032_600 0.1334532392 - - PREDICTED: B2 protein [Jatropha curcas]
11 Hb_004129_010 0.1341857997 - - aspartate aminotransferase, putative [Ricinus communis]
12 Hb_002518_180 0.1355535397 - - hypothetical protein POPTR_0001s25460g [Populus trichocarpa]
13 Hb_000959_120 0.135679535 - - PREDICTED: protein BRASSINOSTEROID INSENSITIVE 1 [Jatropha curcas]
14 Hb_000800_010 0.1359221475 - - PREDICTED: glycosyltransferase family protein 64 protein C5 [Jatropha curcas]
15 Hb_029584_100 0.1386479116 - - Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [Gossypium arboreum]
16 Hb_067664_010 0.1392334706 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
17 Hb_007229_050 0.1409297606 - - PREDICTED: palmitoyl-protein thioesterase 1 isoform X1 [Jatropha curcas]
18 Hb_000386_050 0.1440629179 - - PREDICTED: 2-isopropylmalate synthase 2, chloroplastic-like [Jatropha curcas]
19 Hb_000622_060 0.1447036554 - - PREDICTED: uncharacterized protein At5g05190-like isoform X1 [Jatropha curcas]
20 Hb_000210_040 0.1456184865 - - PREDICTED: putative HVA22-like protein g [Jatropha curcas]

Gene co-expression network

sample Hb_187959_010 Hb_187959_010 Hb_003030_010 Hb_003030_010 Hb_187959_010--Hb_003030_010 Hb_001054_060 Hb_001054_060 Hb_187959_010--Hb_001054_060 Hb_004007_200 Hb_004007_200 Hb_187959_010--Hb_004007_200 Hb_007590_100 Hb_007590_100 Hb_187959_010--Hb_007590_100 Hb_006414_010 Hb_006414_010 Hb_187959_010--Hb_006414_010 Hb_007134_030 Hb_007134_030 Hb_187959_010--Hb_007134_030 Hb_004129_010 Hb_004129_010 Hb_003030_010--Hb_004129_010 Hb_007229_050 Hb_007229_050 Hb_003030_010--Hb_007229_050 Hb_001754_050 Hb_001754_050 Hb_003030_010--Hb_001754_050 Hb_029584_100 Hb_029584_100 Hb_003030_010--Hb_029584_100 Hb_143766_080 Hb_143766_080 Hb_003030_010--Hb_143766_080 Hb_000032_600 Hb_000032_600 Hb_001054_060--Hb_000032_600 Hb_067664_010 Hb_067664_010 Hb_001054_060--Hb_067664_010 Hb_000977_150 Hb_000977_150 Hb_001054_060--Hb_000977_150 Hb_030312_030 Hb_030312_030 Hb_001054_060--Hb_030312_030 Hb_000997_320 Hb_000997_320 Hb_001054_060--Hb_000997_320 Hb_000386_050 Hb_000386_050 Hb_004007_200--Hb_000386_050 Hb_004007_200--Hb_001054_060 Hb_000800_010 Hb_000800_010 Hb_004007_200--Hb_000800_010 Hb_002518_180 Hb_002518_180 Hb_004007_200--Hb_002518_180 Hb_004007_200--Hb_006414_010 Hb_006615_230 Hb_006615_230 Hb_007590_100--Hb_006615_230 Hb_002495_030 Hb_002495_030 Hb_007590_100--Hb_002495_030 Hb_004032_110 Hb_004032_110 Hb_007590_100--Hb_004032_110 Hb_003052_080 Hb_003052_080 Hb_007590_100--Hb_003052_080 Hb_098795_030 Hb_098795_030 Hb_007590_100--Hb_098795_030 Hb_007894_070 Hb_007894_070 Hb_006414_010--Hb_007894_070 Hb_001486_100 Hb_001486_100 Hb_006414_010--Hb_001486_100 Hb_006414_010--Hb_000800_010 Hb_000210_040 Hb_000210_040 Hb_006414_010--Hb_000210_040 Hb_002740_100 Hb_002740_100 Hb_006414_010--Hb_002740_100 Hb_000659_040 Hb_000659_040 Hb_006414_010--Hb_000659_040 Hb_007416_290 Hb_007416_290 Hb_007134_030--Hb_007416_290 Hb_008143_040 Hb_008143_040 Hb_007134_030--Hb_008143_040 Hb_007134_030--Hb_004032_110 Hb_009545_030 Hb_009545_030 Hb_007134_030--Hb_009545_030 Hb_001439_010 Hb_001439_010 Hb_007134_030--Hb_001439_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.084949 4.14851 3.85603 9.01922 0.109981 0.278112
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.911547 1.02396 0.649867 6.52176 8.96509

CAGE analysis