Hb_007894_070

Information

Type -
Description -
Location Contig7894: 61059-65360
Sequence    

Annotation

kegg
ID rcu:RCOM_0081860
description hypothetical protein
nr
ID XP_012070820.1
description PREDICTED: uncharacterized protein LOC105632955 [Jatropha curcas]
swissprot
ID Q66GQ2
description Uncharacterized protein At5g41620 OS=Arabidopsis thaliana GN=At5g41620 PE=2 SV=2
trembl
ID A0A067KSK8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00884 PE=4 SV=1
Gene Ontology
ID GO:0005737
description actin cytoskeleton-regulatory complex protein pan-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58258: 61065-65230
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007894_070 0.0 - - PREDICTED: uncharacterized protein LOC105632955 [Jatropha curcas]
2 Hb_006414_010 0.0784772824 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 9 [Jatropha curcas]
3 Hb_000210_040 0.1000135659 - - PREDICTED: putative HVA22-like protein g [Jatropha curcas]
4 Hb_000227_280 0.1051828152 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 [Jatropha curcas]
5 Hb_000659_040 0.1094705184 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
6 Hb_004241_110 0.1164141977 - - Minor allergen Alt a, putative [Ricinus communis]
7 Hb_001318_100 0.1196249031 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
8 Hb_020378_020 0.1298001684 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
9 Hb_005488_130 0.1327966175 - - transporter, putative [Ricinus communis]
10 Hb_001486_100 0.1333883608 - - tubulin alpha chain, putative [Ricinus communis]
11 Hb_002391_320 0.1342091047 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
12 Hb_000800_010 0.1344415795 - - PREDICTED: glycosyltransferase family protein 64 protein C5 [Jatropha curcas]
13 Hb_002397_050 0.1362246105 - - PREDICTED: ACT domain-containing protein ACR4 isoform X2 [Jatropha curcas]
14 Hb_007590_100 0.1380421324 - - PREDICTED: phosphoinositide phospholipase C 4-like [Jatropha curcas]
15 Hb_003147_040 0.13888811 - - PREDICTED: probable calcium-binding protein CML18 [Jatropha curcas]
16 Hb_003001_130 0.1400000017 - - conserved hypothetical protein [Ricinus communis]
17 Hb_161396_010 0.1434782439 - - hypothetical protein F383_26394 [Gossypium arboreum]
18 Hb_002740_100 0.1435011142 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
19 Hb_000272_030 0.1441780571 - - PREDICTED: WD repeat-containing protein 76 isoform X1 [Jatropha curcas]
20 Hb_001213_030 0.1465234592 - - PAR1 protein [Theobroma cacao]

Gene co-expression network

sample Hb_007894_070 Hb_007894_070 Hb_006414_010 Hb_006414_010 Hb_007894_070--Hb_006414_010 Hb_000210_040 Hb_000210_040 Hb_007894_070--Hb_000210_040 Hb_000227_280 Hb_000227_280 Hb_007894_070--Hb_000227_280 Hb_000659_040 Hb_000659_040 Hb_007894_070--Hb_000659_040 Hb_004241_110 Hb_004241_110 Hb_007894_070--Hb_004241_110 Hb_001318_100 Hb_001318_100 Hb_007894_070--Hb_001318_100 Hb_001486_100 Hb_001486_100 Hb_006414_010--Hb_001486_100 Hb_000800_010 Hb_000800_010 Hb_006414_010--Hb_000800_010 Hb_006414_010--Hb_000210_040 Hb_002740_100 Hb_002740_100 Hb_006414_010--Hb_002740_100 Hb_006414_010--Hb_000659_040 Hb_003607_140 Hb_003607_140 Hb_000210_040--Hb_003607_140 Hb_004421_010 Hb_004421_010 Hb_000210_040--Hb_004421_010 Hb_003879_020 Hb_003879_020 Hb_000210_040--Hb_003879_020 Hb_000210_040--Hb_000659_040 Hb_005488_130 Hb_005488_130 Hb_000227_280--Hb_005488_130 Hb_003001_130 Hb_003001_130 Hb_000227_280--Hb_003001_130 Hb_000283_140 Hb_000283_140 Hb_000227_280--Hb_000283_140 Hb_000028_430 Hb_000028_430 Hb_000227_280--Hb_000028_430 Hb_000227_280--Hb_004241_110 Hb_003147_040 Hb_003147_040 Hb_000659_040--Hb_003147_040 Hb_000363_250 Hb_000363_250 Hb_000659_040--Hb_000363_250 Hb_000272_030 Hb_000272_030 Hb_000659_040--Hb_000272_030 Hb_000659_040--Hb_001318_100 Hb_000856_200 Hb_000856_200 Hb_000659_040--Hb_000856_200 Hb_084147_010 Hb_084147_010 Hb_004241_110--Hb_084147_010 Hb_012395_110 Hb_012395_110 Hb_004241_110--Hb_012395_110 Hb_004241_110--Hb_003001_130 Hb_004241_110--Hb_001318_100 Hb_003266_090 Hb_003266_090 Hb_001318_100--Hb_003266_090 Hb_010222_040 Hb_010222_040 Hb_001318_100--Hb_010222_040 Hb_009113_080 Hb_009113_080 Hb_001318_100--Hb_009113_080 Hb_003125_210 Hb_003125_210 Hb_001318_100--Hb_003125_210 Hb_001318_100--Hb_000856_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.486432 10.3691 13.1031 21.5915 0.15834 0.192043
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.748039 2.35456 1.5699 7.03131 18.0569

CAGE analysis