Hb_000300_680

Information

Type -
Description -
Location Contig300: 601731-607063
Sequence    

Annotation

kegg
ID pop:POPTR_0019s05080g
description POPTRDRAFT_738467; hypothetical protein
nr
ID XP_012070446.1
description PREDICTED: uncharacterized protein LOC105632625 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KXM9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02718 PE=4 SV=1
Gene Ontology
ID GO:0009507
description fmn binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31641: 601803-607084 , PASA_asmbl_31642: 604357-607084
cDNA
(Sanger)
(ID:Location)		 036_I15.ab1: 604357-606865 , 045_L12.ab1: 604385-606865 , 047_P20.ab1: 607328-607621

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_680 0.0 - - PREDICTED: uncharacterized protein LOC105632625 isoform X1 [Jatropha curcas]
2 Hb_000616_030 0.0872239224 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
3 Hb_031330_020 0.0942404944 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
4 Hb_000329_080 0.1062793428 - - PREDICTED: transketolase, chloroplastic [Jatropha curcas]
5 Hb_001916_150 0.1149545256 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-3 [Vitis vinifera]
6 Hb_000163_110 0.1176492138 - - PREDICTED: blue-light photoreceptor PHR2 [Jatropha curcas]
7 Hb_000975_050 0.1178323684 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
8 Hb_001365_010 0.1230687443 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
9 Hb_000441_050 0.1238087569 - - PREDICTED: 187-kDa microtubule-associated protein AIR9 [Jatropha curcas]
10 Hb_001124_230 0.1267844052 - - PREDICTED: divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic [Jatropha curcas]
11 Hb_007933_030 0.1277406166 - - PREDICTED: uncharacterized protein LOC105639932 [Jatropha curcas]
12 Hb_005977_060 0.1300465895 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000997_320 0.1339651379 - - PREDICTED: acylamino-acid-releasing enzyme-like [Malus domestica]
14 Hb_000834_080 0.1384998709 - - PREDICTED: uncharacterized protein LOC105637718 [Jatropha curcas]
15 Hb_003783_050 0.1399101338 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000805_010 0.1403792519 - - PREDICTED: uncharacterized protein LOC105629931 [Jatropha curcas]
17 Hb_004242_170 0.141324509 - - calcium/calmodulin-regulated receptor-like kinase [Manihot esculenta]
18 Hb_002235_110 0.1458195976 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
19 Hb_134813_010 0.1458347527 - - aldo/keto reductase, putative [Ricinus communis]
20 Hb_003778_020 0.1477162624 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]

Gene co-expression network

sample Hb_000300_680 Hb_000300_680 Hb_000616_030 Hb_000616_030 Hb_000300_680--Hb_000616_030 Hb_031330_020 Hb_031330_020 Hb_000300_680--Hb_031330_020 Hb_000329_080 Hb_000329_080 Hb_000300_680--Hb_000329_080 Hb_001916_150 Hb_001916_150 Hb_000300_680--Hb_001916_150 Hb_000163_110 Hb_000163_110 Hb_000300_680--Hb_000163_110 Hb_000975_050 Hb_000975_050 Hb_000300_680--Hb_000975_050 Hb_001124_230 Hb_001124_230 Hb_000616_030--Hb_001124_230 Hb_000441_050 Hb_000441_050 Hb_000616_030--Hb_000441_050 Hb_000612_090 Hb_000612_090 Hb_000616_030--Hb_000612_090 Hb_005977_060 Hb_005977_060 Hb_000616_030--Hb_005977_060 Hb_000616_030--Hb_000975_050 Hb_031330_020--Hb_001916_150 Hb_003778_020 Hb_003778_020 Hb_031330_020--Hb_003778_020 Hb_031330_020--Hb_000975_050 Hb_134813_010 Hb_134813_010 Hb_031330_020--Hb_134813_010 Hb_011053_020 Hb_011053_020 Hb_031330_020--Hb_011053_020 Hb_001365_010 Hb_001365_010 Hb_000329_080--Hb_001365_010 Hb_000329_080--Hb_000163_110 Hb_001195_370 Hb_001195_370 Hb_000329_080--Hb_001195_370 Hb_001811_080 Hb_001811_080 Hb_000329_080--Hb_001811_080 Hb_000977_150 Hb_000977_150 Hb_000329_080--Hb_000977_150 Hb_003783_050 Hb_003783_050 Hb_001916_150--Hb_003783_050 Hb_001916_150--Hb_003778_020 Hb_003226_250 Hb_003226_250 Hb_001916_150--Hb_003226_250 Hb_030312_030 Hb_030312_030 Hb_001916_150--Hb_030312_030 Hb_114917_010 Hb_114917_010 Hb_001916_150--Hb_114917_010 Hb_001365_020 Hb_001365_020 Hb_000163_110--Hb_001365_020 Hb_000163_110--Hb_001365_010 Hb_000163_110--Hb_000441_050 Hb_000163_110--Hb_005977_060 Hb_000966_040 Hb_000966_040 Hb_000975_050--Hb_000966_040 Hb_010098_040 Hb_010098_040 Hb_000975_050--Hb_010098_040 Hb_000834_080 Hb_000834_080 Hb_000975_050--Hb_000834_080 Hb_000975_050--Hb_000441_050 Hb_005181_120 Hb_005181_120 Hb_000975_050--Hb_005181_120 Hb_000975_050--Hb_005977_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.201 3.25539 10.7799 19.0035 1.51022 2.54867
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.25634 2.25943 2.66905 9.17633 45.624

CAGE analysis