Hb_000612_090

Information

Type -
Description -
Location Contig612: 123996-127569
Sequence    

Annotation

kegg
ID rcu:RCOM_0864750
description Protein dif-1, putative
nr
ID XP_012076240.1
description PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
swissprot
ID Q93XM7
description Mitochondrial carnitine/acylcarnitine carrier-like protein OS=Arabidopsis thaliana GN=BOU PE=2 SV=1
trembl
ID A0A067KDN2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12674 PE=3 SV=1
Gene Ontology
ID GO:0009507
description mitochondrial carnitine acylcarnitine carrier-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51022: 123999-127571 , PASA_asmbl_51023: 127290-127574 , PASA_asmbl_51025: 125634-127628
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000612_090 0.0 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
2 Hb_002662_110 0.0940273345 - - Kinesin heavy chain, putative [Ricinus communis]
3 Hb_074197_030 0.0946948286 - - unnamed protein product [Vitis vinifera]
4 Hb_002235_110 0.0971397583 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
5 Hb_000441_050 0.1003669692 - - PREDICTED: 187-kDa microtubule-associated protein AIR9 [Jatropha curcas]
6 Hb_002817_040 0.1037017799 - - PREDICTED: kinesin-II 85 kDa subunit isoform X1 [Jatropha curcas]
7 Hb_005977_060 0.1053452757 - - conserved hypothetical protein [Ricinus communis]
8 Hb_172426_060 0.1127166019 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Jatropha curcas]
9 Hb_000352_280 0.1128262875 - - PREDICTED: acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X2 [Jatropha curcas]
10 Hb_005276_070 0.1162652439 - - PREDICTED: RAN GTPase-activating protein 1 [Jatropha curcas]
11 Hb_000108_150 0.1168098189 - - alpha/beta hydrolase, putative [Ricinus communis]
12 Hb_004242_170 0.1196657639 - - calcium/calmodulin-regulated receptor-like kinase [Manihot esculenta]
13 Hb_001124_230 0.1211291647 - - PREDICTED: divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic [Jatropha curcas]
14 Hb_000805_010 0.1223236627 - - PREDICTED: uncharacterized protein LOC105629931 [Jatropha curcas]
15 Hb_032631_030 0.1248237816 - - phosphatidic acid phosphatase, putative [Ricinus communis]
16 Hb_015141_010 0.1260058353 - - gamma-tocopherol methyltransferase [Hevea brasiliensis]
17 Hb_002028_180 0.1268253405 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
18 Hb_000679_080 0.1276550498 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
19 Hb_004096_210 0.1290762822 - - PREDICTED: uncharacterized protein LOC105638707 isoform X2 [Jatropha curcas]
20 Hb_000616_030 0.1308508595 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]

Gene co-expression network

sample Hb_000612_090 Hb_000612_090 Hb_002662_110 Hb_002662_110 Hb_000612_090--Hb_002662_110 Hb_074197_030 Hb_074197_030 Hb_000612_090--Hb_074197_030 Hb_002235_110 Hb_002235_110 Hb_000612_090--Hb_002235_110 Hb_000441_050 Hb_000441_050 Hb_000612_090--Hb_000441_050 Hb_002817_040 Hb_002817_040 Hb_000612_090--Hb_002817_040 Hb_005977_060 Hb_005977_060 Hb_000612_090--Hb_005977_060 Hb_004994_330 Hb_004994_330 Hb_002662_110--Hb_004994_330 Hb_005276_070 Hb_005276_070 Hb_002662_110--Hb_005276_070 Hb_003416_020 Hb_003416_020 Hb_002662_110--Hb_003416_020 Hb_000679_080 Hb_000679_080 Hb_002662_110--Hb_000679_080 Hb_032631_030 Hb_032631_030 Hb_002662_110--Hb_032631_030 Hb_000352_280 Hb_000352_280 Hb_074197_030--Hb_000352_280 Hb_015141_010 Hb_015141_010 Hb_074197_030--Hb_015141_010 Hb_074197_030--Hb_002235_110 Hb_172426_060 Hb_172426_060 Hb_074197_030--Hb_172426_060 Hb_008725_090 Hb_008725_090 Hb_074197_030--Hb_008725_090 Hb_002949_020 Hb_002949_020 Hb_002235_110--Hb_002949_020 Hb_000054_030 Hb_000054_030 Hb_002235_110--Hb_000054_030 Hb_002235_110--Hb_005276_070 Hb_000805_010 Hb_000805_010 Hb_002235_110--Hb_000805_010 Hb_000441_050--Hb_005977_060 Hb_004242_170 Hb_004242_170 Hb_000441_050--Hb_004242_170 Hb_001053_020 Hb_001053_020 Hb_000441_050--Hb_001053_020 Hb_001365_020 Hb_001365_020 Hb_000441_050--Hb_001365_020 Hb_002374_450 Hb_002374_450 Hb_000441_050--Hb_002374_450 Hb_000441_050--Hb_005276_070 Hb_001369_100 Hb_001369_100 Hb_002817_040--Hb_001369_100 Hb_009079_050 Hb_009079_050 Hb_002817_040--Hb_009079_050 Hb_000749_020 Hb_000749_020 Hb_002817_040--Hb_000749_020 Hb_000108_150 Hb_000108_150 Hb_002817_040--Hb_000108_150 Hb_002028_180 Hb_002028_180 Hb_002817_040--Hb_002028_180 Hb_005977_060--Hb_005276_070 Hb_005977_060--Hb_004242_170 Hb_009692_040 Hb_009692_040 Hb_005977_060--Hb_009692_040 Hb_005977_060--Hb_001365_020 Hb_005977_060--Hb_001053_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.09718 3.18855 24.995 26.8823 1.85335 2.25586
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.96046 1.98977 2.60049 7.44194 42.8526

CAGE analysis