Hb_000054_030

Information

Type -
Description -
Location Contig54: 43111-46147
Sequence    

Annotation

kegg
ID pop:POPTR_0010s17680g
description POPTRDRAFT_822311; hypothetical protein
nr
ID XP_006378595.1
description hypothetical protein POPTR_0010s17680g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5G4M2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s17680g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47776: 19574-46229
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000054_030 0.0 - - hypothetical protein POPTR_0010s17680g [Populus trichocarpa]
2 Hb_002235_110 0.108107783 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
3 Hb_002949_020 0.113701102 transcription factor TF Family: bHLH hypothetical protein POPTR_0002s23650g [Populus trichocarpa]
4 Hb_002397_050 0.1199867098 - - PREDICTED: ACT domain-containing protein ACR4 isoform X2 [Jatropha curcas]
5 Hb_003226_200 0.1226484628 - - magnesium/proton exchanger, putative [Ricinus communis]
6 Hb_033152_110 0.1238332296 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN3 [Jatropha curcas]
7 Hb_074197_030 0.123891417 - - unnamed protein product [Vitis vinifera]
8 Hb_004162_270 0.1265855233 - - PREDICTED: superoxide dismutase [Cu-Zn], chloroplastic isoform X1 [Jatropha curcas]
9 Hb_000395_010 0.1269949775 - - alpha/beta hydrolase domain containing protein 1,3, putative [Ricinus communis]
10 Hb_161396_010 0.1331368374 - - hypothetical protein F383_26394 [Gossypium arboreum]
11 Hb_000115_360 0.1346755709 - - PREDICTED: probable protein phosphatase 2C 15 isoform X3 [Jatropha curcas]
12 Hb_005493_010 0.1353005844 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
13 Hb_002759_220 0.1356173532 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
14 Hb_001916_150 0.1383856583 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-3 [Vitis vinifera]
15 Hb_004032_110 0.1401299901 - - PREDICTED: putative methylesterase 14, chloroplastic [Jatropha curcas]
16 Hb_000612_090 0.1455766051 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
17 Hb_003053_070 0.1463657637 - - PREDICTED: phosphoglucan phosphatase LSF1, chloroplastic [Jatropha curcas]
18 Hb_000684_200 0.1469291486 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
19 Hb_000805_010 0.1474046085 - - PREDICTED: uncharacterized protein LOC105629931 [Jatropha curcas]
20 Hb_015141_010 0.1489517861 - - gamma-tocopherol methyltransferase [Hevea brasiliensis]

Gene co-expression network

sample Hb_000054_030 Hb_000054_030 Hb_002235_110 Hb_002235_110 Hb_000054_030--Hb_002235_110 Hb_002949_020 Hb_002949_020 Hb_000054_030--Hb_002949_020 Hb_002397_050 Hb_002397_050 Hb_000054_030--Hb_002397_050 Hb_003226_200 Hb_003226_200 Hb_000054_030--Hb_003226_200 Hb_033152_110 Hb_033152_110 Hb_000054_030--Hb_033152_110 Hb_074197_030 Hb_074197_030 Hb_000054_030--Hb_074197_030 Hb_000612_090 Hb_000612_090 Hb_002235_110--Hb_000612_090 Hb_002235_110--Hb_002949_020 Hb_002235_110--Hb_074197_030 Hb_005276_070 Hb_005276_070 Hb_002235_110--Hb_005276_070 Hb_000805_010 Hb_000805_010 Hb_002235_110--Hb_000805_010 Hb_004032_110 Hb_004032_110 Hb_002949_020--Hb_004032_110 Hb_001278_090 Hb_001278_090 Hb_002949_020--Hb_001278_090 Hb_006370_050 Hb_006370_050 Hb_002949_020--Hb_006370_050 Hb_002949_020--Hb_074197_030 Hb_000457_250 Hb_000457_250 Hb_002397_050--Hb_000457_250 Hb_000115_360 Hb_000115_360 Hb_002397_050--Hb_000115_360 Hb_002397_050--Hb_004032_110 Hb_002716_110 Hb_002716_110 Hb_002397_050--Hb_002716_110 Hb_006736_050 Hb_006736_050 Hb_002397_050--Hb_006736_050 Hb_003226_200--Hb_033152_110 Hb_000622_060 Hb_000622_060 Hb_003226_200--Hb_000622_060 Hb_003226_200--Hb_000115_360 Hb_000979_260 Hb_000979_260 Hb_003226_200--Hb_000979_260 Hb_002759_220 Hb_002759_220 Hb_003226_200--Hb_002759_220 Hb_000008_060 Hb_000008_060 Hb_003226_200--Hb_000008_060 Hb_033152_110--Hb_000115_360 Hb_033152_110--Hb_000622_060 Hb_000130_200 Hb_000130_200 Hb_033152_110--Hb_000130_200 Hb_001754_120 Hb_001754_120 Hb_033152_110--Hb_001754_120 Hb_000046_480 Hb_000046_480 Hb_033152_110--Hb_000046_480 Hb_000352_280 Hb_000352_280 Hb_074197_030--Hb_000352_280 Hb_074197_030--Hb_000612_090 Hb_015141_010 Hb_015141_010 Hb_074197_030--Hb_015141_010 Hb_172426_060 Hb_172426_060 Hb_074197_030--Hb_172426_060 Hb_008725_090 Hb_008725_090 Hb_074197_030--Hb_008725_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.315496 3.87435 15.5699 18.0646 0.569609 0.298069
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.99396 4.27448 1.76236 8.40895 30.3917

CAGE analysis