Hb_000622_060

Information

Type -
Description -
Location Contig622: 74195-79653
Sequence    

Annotation

kegg
ID rcu:RCOM_0237030
description hypothetical protein
nr
ID XP_012083245.1
description PREDICTED: uncharacterized protein At5g05190-like isoform X1 [Jatropha curcas]
swissprot
ID Q9FHK4
description Uncharacterized protein At5g05190 OS=Arabidopsis thaliana GN=Y-1 PE=1 SV=1
trembl
ID A0A067K9M0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14285 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51546: 74233-76364
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000622_060 0.0 - - PREDICTED: uncharacterized protein At5g05190-like isoform X1 [Jatropha curcas]
2 Hb_000115_360 0.0936318372 - - PREDICTED: probable protein phosphatase 2C 15 isoform X3 [Jatropha curcas]
3 Hb_000130_200 0.0937552904 - - PREDICTED: putative serine/threonine-protein kinase isoform X3 [Jatropha curcas]
4 Hb_033152_110 0.1007210949 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN3 [Jatropha curcas]
5 Hb_003226_200 0.1030123155 - - magnesium/proton exchanger, putative [Ricinus communis]
6 Hb_000032_600 0.1094622234 - - PREDICTED: B2 protein [Jatropha curcas]
7 Hb_004129_010 0.1148975884 - - aspartate aminotransferase, putative [Ricinus communis]
8 Hb_001754_120 0.1149577862 - - PREDICTED: probable protein phosphatase 2C 40 [Jatropha curcas]
9 Hb_000070_110 0.1157075669 - - PREDICTED: uncharacterized protein LOC105645744 isoform X1 [Jatropha curcas]
10 Hb_007229_050 0.1167710052 - - PREDICTED: palmitoyl-protein thioesterase 1 isoform X1 [Jatropha curcas]
11 Hb_004326_010 0.1244516366 - - cationic amino acid transporter, putative [Ricinus communis]
12 Hb_003778_020 0.1261561983 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
13 Hb_000861_100 0.1266899 - - PREDICTED: probable fucosyltransferase 8 isoform X1 [Jatropha curcas]
14 Hb_000008_060 0.1274565986 - - protein binding protein, putative [Ricinus communis]
15 Hb_178968_080 0.1287131885 - - PREDICTED: serine/threonine-protein kinase OSR1 isoform X2 [Jatropha curcas]
16 Hb_006185_030 0.1308351755 - - threonine synthase, putative [Ricinus communis]
17 Hb_001054_060 0.1314942663 - - PREDICTED: dihydropyrimidine dehydrogenase [NADP(+)] [Jatropha curcas]
18 Hb_009803_020 0.1317694304 - - hypothetical protein PRUPE_ppa006317mg [Prunus persica]
19 Hb_000181_460 0.1328420284 - - cmp-2-keto-3-deoctulosonate (cmp-kdo) cytidyltransferase, putative [Ricinus communis]
20 Hb_003030_010 0.1349343706 - - PREDICTED: random slug protein 5-like [Jatropha curcas]

Gene co-expression network

sample Hb_000622_060 Hb_000622_060 Hb_000115_360 Hb_000115_360 Hb_000622_060--Hb_000115_360 Hb_000130_200 Hb_000130_200 Hb_000622_060--Hb_000130_200 Hb_033152_110 Hb_033152_110 Hb_000622_060--Hb_033152_110 Hb_003226_200 Hb_003226_200 Hb_000622_060--Hb_003226_200 Hb_000032_600 Hb_000032_600 Hb_000622_060--Hb_000032_600 Hb_004129_010 Hb_004129_010 Hb_000622_060--Hb_004129_010 Hb_000115_360--Hb_033152_110 Hb_002391_320 Hb_002391_320 Hb_000115_360--Hb_002391_320 Hb_000115_360--Hb_003226_200 Hb_000115_360--Hb_004129_010 Hb_112064_010 Hb_112064_010 Hb_000115_360--Hb_112064_010 Hb_000070_110 Hb_000070_110 Hb_000130_200--Hb_000070_110 Hb_178968_080 Hb_178968_080 Hb_000130_200--Hb_178968_080 Hb_000130_200--Hb_000032_600 Hb_000130_200--Hb_033152_110 Hb_002529_090 Hb_002529_090 Hb_000130_200--Hb_002529_090 Hb_033152_110--Hb_003226_200 Hb_001754_120 Hb_001754_120 Hb_033152_110--Hb_001754_120 Hb_000046_480 Hb_000046_480 Hb_033152_110--Hb_000046_480 Hb_000979_260 Hb_000979_260 Hb_003226_200--Hb_000979_260 Hb_002759_220 Hb_002759_220 Hb_003226_200--Hb_002759_220 Hb_000008_060 Hb_000008_060 Hb_003226_200--Hb_000008_060 Hb_067664_010 Hb_067664_010 Hb_000032_600--Hb_067664_010 Hb_001054_060 Hb_001054_060 Hb_000032_600--Hb_001054_060 Hb_000977_150 Hb_000977_150 Hb_000032_600--Hb_000977_150 Hb_000032_600--Hb_178968_080 Hb_000032_600--Hb_001754_120 Hb_005588_120 Hb_005588_120 Hb_004129_010--Hb_005588_120 Hb_001754_050 Hb_001754_050 Hb_004129_010--Hb_001754_050 Hb_007229_050 Hb_007229_050 Hb_004129_010--Hb_007229_050 Hb_000256_160 Hb_000256_160 Hb_004129_010--Hb_000256_160 Hb_000157_140 Hb_000157_140 Hb_004129_010--Hb_000157_140 Hb_003030_010 Hb_003030_010 Hb_004129_010--Hb_003030_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.334629 2.34782 4.16906 5.63599 0.0582822 0.299052
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.821014 1.41945 1.67039 4.27151 6.80482

CAGE analysis