Hb_002759_220

Information

Type -
Description -
Location Contig2759: 213250-219515
Sequence    

Annotation

kegg
ID rcu:RCOM_0699900
description altered response to gravity (arg1), plant, putative
nr
ID XP_002520215.1
description altered response to gravity (arg1), plant, putative [Ricinus communis]
swissprot
ID Q8VXV4
description Chaperone protein dnaJ 16 OS=Arabidopsis thaliana GN=ATJ16 PE=2 SV=1
trembl
ID B9S2J6
description Altered response to gravity (Arg1), plant, putative OS=Ricinus communis GN=RCOM_0699900 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28870: 212989-219394
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002759_220 0.0 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
2 Hb_003226_200 0.1077518728 - - magnesium/proton exchanger, putative [Ricinus communis]
3 Hb_000193_340 0.1148552932 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
4 Hb_003226_250 0.1148905813 - - PREDICTED: UDP-glucuronic acid decarboxylase 2 [Jatropha curcas]
5 Hb_161396_010 0.1154383067 - - hypothetical protein F383_26394 [Gossypium arboreum]
6 Hb_006153_160 0.1166928243 - - PREDICTED: oxysterol-binding protein-related protein 2A isoform X4 [Jatropha curcas]
7 Hb_000805_010 0.1181680926 - - PREDICTED: uncharacterized protein LOC105629931 [Jatropha curcas]
8 Hb_001369_010 0.1195058249 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
9 Hb_000140_060 0.1199884158 - - 50S ribosomal protein L5, putative [Ricinus communis]
10 Hb_001433_150 0.120187997 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003935_070 0.1203440757 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
12 Hb_000749_020 0.1255731571 - - Nucleotide-diphospho-sugar transferases superfamily protein isoform 1 [Theobroma cacao]
13 Hb_033152_110 0.1287716155 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN3 [Jatropha curcas]
14 Hb_000808_150 0.1305656202 - - PREDICTED: uncharacterized protein LOC105647444 [Jatropha curcas]
15 Hb_004041_050 0.1314023565 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
16 Hb_000649_040 0.133636973 - - PREDICTED: dynamin-related protein 1C [Jatropha curcas]
17 Hb_000054_030 0.1356173532 - - hypothetical protein POPTR_0010s17680g [Populus trichocarpa]
18 Hb_001153_100 0.1367445641 transcription factor TF Family: HB PREDICTED: homeobox protein HD1 [Jatropha curcas]
19 Hb_000077_310 0.1387307731 - - PREDICTED: clathrin light chain 1 [Jatropha curcas]
20 Hb_001195_660 0.1402538872 - - metalloendopeptidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002759_220 Hb_002759_220 Hb_003226_200 Hb_003226_200 Hb_002759_220--Hb_003226_200 Hb_000193_340 Hb_000193_340 Hb_002759_220--Hb_000193_340 Hb_003226_250 Hb_003226_250 Hb_002759_220--Hb_003226_250 Hb_161396_010 Hb_161396_010 Hb_002759_220--Hb_161396_010 Hb_006153_160 Hb_006153_160 Hb_002759_220--Hb_006153_160 Hb_000805_010 Hb_000805_010 Hb_002759_220--Hb_000805_010 Hb_033152_110 Hb_033152_110 Hb_003226_200--Hb_033152_110 Hb_000622_060 Hb_000622_060 Hb_003226_200--Hb_000622_060 Hb_000115_360 Hb_000115_360 Hb_003226_200--Hb_000115_360 Hb_000979_260 Hb_000979_260 Hb_003226_200--Hb_000979_260 Hb_000008_060 Hb_000008_060 Hb_003226_200--Hb_000008_060 Hb_000193_340--Hb_006153_160 Hb_007101_260 Hb_007101_260 Hb_000193_340--Hb_007101_260 Hb_000193_340--Hb_161396_010 Hb_000808_150 Hb_000808_150 Hb_000193_340--Hb_000808_150 Hb_000328_010 Hb_000328_010 Hb_000193_340--Hb_000328_010 Hb_001369_010 Hb_001369_010 Hb_003226_250--Hb_001369_010 Hb_003226_250--Hb_000808_150 Hb_011310_040 Hb_011310_040 Hb_003226_250--Hb_011310_040 Hb_002596_080 Hb_002596_080 Hb_003226_250--Hb_002596_080 Hb_003462_040 Hb_003462_040 Hb_003226_250--Hb_003462_040 Hb_000076_030 Hb_000076_030 Hb_161396_010--Hb_000076_030 Hb_161396_010--Hb_007101_260 Hb_161396_010--Hb_000808_150 Hb_048476_140 Hb_048476_140 Hb_161396_010--Hb_048476_140 Hb_006153_160--Hb_000328_010 Hb_012395_110 Hb_012395_110 Hb_006153_160--Hb_012395_110 Hb_001433_150 Hb_001433_150 Hb_006153_160--Hb_001433_150 Hb_006153_160--Hb_007101_260 Hb_003935_070 Hb_003935_070 Hb_000805_010--Hb_003935_070 Hb_015141_010 Hb_015141_010 Hb_000805_010--Hb_015141_010 Hb_002817_040 Hb_002817_040 Hb_000805_010--Hb_002817_040 Hb_002235_110 Hb_002235_110 Hb_000805_010--Hb_002235_110 Hb_000395_010 Hb_000395_010 Hb_000805_010--Hb_000395_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.656713 3.55915 10.866 15.6237 0.287171 0.212258
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.2004 2.05725 2.73196 2.73459 18.1463

CAGE analysis