Hb_002397_050

Information

Type -
Description -
Location Contig2397: 61543-64336
Sequence    

Annotation

kegg
ID rcu:RCOM_1619630
description amino acid binding protein, putative
nr
ID XP_012067837.1
description PREDICTED: ACT domain-containing protein ACR4 isoform X2 [Jatropha curcas]
swissprot
ID Q8LJW3
description ACT domain-containing protein ACR4 OS=Arabidopsis thaliana GN=ACR4 PE=2 SV=1
trembl
ID A0A067KYX6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15764 PE=4 SV=1
Gene Ontology
ID GO:0016597
description amino acid binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25091: 60942-61553 , PASA_asmbl_25092: 61832-64422 , PASA_asmbl_25093: 61988-63473 , PASA_asmbl_25094: 60926-63473
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002397_050 0.0 - - PREDICTED: ACT domain-containing protein ACR4 isoform X2 [Jatropha curcas]
2 Hb_000054_030 0.1199867098 - - hypothetical protein POPTR_0010s17680g [Populus trichocarpa]
3 Hb_000457_250 0.120597979 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
4 Hb_000115_360 0.12778712 - - PREDICTED: probable protein phosphatase 2C 15 isoform X3 [Jatropha curcas]
5 Hb_004032_110 0.1285152976 - - PREDICTED: putative methylesterase 14, chloroplastic [Jatropha curcas]
6 Hb_002716_110 0.1286162161 - - PREDICTED: interaptin [Jatropha curcas]
7 Hb_006736_050 0.1292460629 - - hypothetical protein POPTR_0006s04450g [Populus trichocarpa]
8 Hb_161396_010 0.1315827537 - - hypothetical protein F383_26394 [Gossypium arboreum]
9 Hb_007894_070 0.1362246105 - - PREDICTED: uncharacterized protein LOC105632955 [Jatropha curcas]
10 Hb_033152_110 0.1393998049 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN3 [Jatropha curcas]
11 Hb_001153_100 0.1407341007 transcription factor TF Family: HB PREDICTED: homeobox protein HD1 [Jatropha curcas]
12 Hb_004855_020 0.142803402 - - hypothetical protein POPTR_0006s10010g [Populus trichocarpa]
13 Hb_000753_110 0.1438348981 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM1 isoform X6 [Jatropha curcas]
14 Hb_000392_250 0.1438522171 - - PREDICTED: HVA22-like protein a [Jatropha curcas]
15 Hb_007101_260 0.145693951 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
16 Hb_000310_060 0.1466362523 - - hypothetical protein JCGZ_20793 [Jatropha curcas]
17 Hb_001675_270 0.1469283045 - - PREDICTED: probable inactive nicotinamidase At3g16190 [Jatropha curcas]
18 Hb_000076_030 0.148150113 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 isoform X1 [Jatropha curcas]
19 Hb_002949_020 0.1488142959 transcription factor TF Family: bHLH hypothetical protein POPTR_0002s23650g [Populus trichocarpa]
20 Hb_005493_010 0.1493099111 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_002397_050 Hb_002397_050 Hb_000054_030 Hb_000054_030 Hb_002397_050--Hb_000054_030 Hb_000457_250 Hb_000457_250 Hb_002397_050--Hb_000457_250 Hb_000115_360 Hb_000115_360 Hb_002397_050--Hb_000115_360 Hb_004032_110 Hb_004032_110 Hb_002397_050--Hb_004032_110 Hb_002716_110 Hb_002716_110 Hb_002397_050--Hb_002716_110 Hb_006736_050 Hb_006736_050 Hb_002397_050--Hb_006736_050 Hb_002235_110 Hb_002235_110 Hb_000054_030--Hb_002235_110 Hb_002949_020 Hb_002949_020 Hb_000054_030--Hb_002949_020 Hb_003226_200 Hb_003226_200 Hb_000054_030--Hb_003226_200 Hb_033152_110 Hb_033152_110 Hb_000054_030--Hb_033152_110 Hb_074197_030 Hb_074197_030 Hb_000054_030--Hb_074197_030 Hb_004162_270 Hb_004162_270 Hb_000457_250--Hb_004162_270 Hb_010632_020 Hb_010632_020 Hb_000457_250--Hb_010632_020 Hb_003688_140 Hb_003688_140 Hb_000457_250--Hb_003688_140 Hb_000457_250--Hb_000054_030 Hb_000457_250--Hb_002716_110 Hb_000115_360--Hb_033152_110 Hb_000622_060 Hb_000622_060 Hb_000115_360--Hb_000622_060 Hb_002391_320 Hb_002391_320 Hb_000115_360--Hb_002391_320 Hb_000115_360--Hb_003226_200 Hb_004129_010 Hb_004129_010 Hb_000115_360--Hb_004129_010 Hb_112064_010 Hb_112064_010 Hb_000115_360--Hb_112064_010 Hb_004032_110--Hb_002949_020 Hb_001439_010 Hb_001439_010 Hb_004032_110--Hb_001439_010 Hb_036388_010 Hb_036388_010 Hb_004032_110--Hb_036388_010 Hb_007590_100 Hb_007590_100 Hb_004032_110--Hb_007590_100 Hb_007134_030 Hb_007134_030 Hb_004032_110--Hb_007134_030 Hb_000679_030 Hb_000679_030 Hb_002716_110--Hb_000679_030 Hb_005493_010 Hb_005493_010 Hb_002716_110--Hb_005493_010 Hb_002817_050 Hb_002817_050 Hb_002716_110--Hb_002817_050 Hb_002716_110--Hb_003688_140 Hb_002716_110--Hb_000054_030 Hb_189003_070 Hb_189003_070 Hb_006736_050--Hb_189003_070 Hb_006736_050--Hb_036388_010 Hb_006120_060 Hb_006120_060 Hb_006736_050--Hb_006120_060 Hb_000768_150 Hb_000768_150 Hb_006736_050--Hb_000768_150 Hb_000120_740 Hb_000120_740 Hb_006736_050--Hb_000120_740 Hb_000283_140 Hb_000283_140 Hb_006736_050--Hb_000283_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.307852 5.63834 15.0971 16.0424 0.563174 0.304703
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.14297 3.09114 0.531206 7.41102 17.5859

CAGE analysis