Hb_000679_030

Information

Type transcription factor
Description TF Family: bZIP
Location Contig679: 38135-40311
Sequence    

Annotation

kegg
ID rcu:RCOM_0924540
description transcription factor hy5, putative
nr
ID XP_012076602.1
description PREDICTED: transcription factor HY5 [Jatropha curcas]
swissprot
ID Q9SM50
description Transcription factor HY5 OS=Solanum lycopersicum GN=HY5 PE=2 SV=1
trembl
ID A0A067KF35
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07184 PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcription factor hy5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53668: 39087-40320
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000679_030 0.0 transcription factor TF Family: bZIP PREDICTED: transcription factor HY5 [Jatropha curcas]
2 Hb_002716_110 0.1282809006 - - PREDICTED: interaptin [Jatropha curcas]
3 Hb_005488_130 0.1503287862 - - transporter, putative [Ricinus communis]
4 Hb_056196_010 0.1535525765 - - PREDICTED: uncharacterized protein LOC105108358 [Populus euphratica]
5 Hb_164945_020 0.1542692386 - - PREDICTED: protein IQ-DOMAIN 14 [Jatropha curcas]
6 Hb_000069_690 0.1657126631 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF6 [Jatropha curcas]
7 Hb_002397_050 0.1693814288 - - PREDICTED: ACT domain-containing protein ACR4 isoform X2 [Jatropha curcas]
8 Hb_012132_020 0.1747033289 - - glutamine synthetase [Hevea brasiliensis]
9 Hb_002835_280 0.1767075417 - - PREDICTED: L-type lectin-domain containing receptor kinase S.1 [Jatropha curcas]
10 Hb_000922_350 0.179415181 - - PREDICTED: uncharacterized protein LOC105640367 [Jatropha curcas]
11 Hb_007894_070 0.1801964545 - - PREDICTED: uncharacterized protein LOC105632955 [Jatropha curcas]
12 Hb_003688_140 0.1807625148 - - PREDICTED: uncharacterized protein LOC105640628 [Jatropha curcas]
13 Hb_001250_080 0.1839287562 - - PREDICTED: F-box/kelch-repeat protein At1g23390 [Jatropha curcas]
14 Hb_074109_010 0.1852116953 - - PREDICTED: putative auxin efflux carrier component 5 [Jatropha curcas]
15 Hb_000227_280 0.1889116415 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 [Jatropha curcas]
16 Hb_032568_010 0.1896800118 - - PREDICTED: protein phosphatase 2C 56-like [Jatropha curcas]
17 Hb_001014_020 0.1909361158 - - gene GA family protein [Populus trichocarpa]
18 Hb_011310_180 0.1917891439 - - PREDICTED: phospholipase D alpha 1-like isoform X1 [Jatropha curcas]
19 Hb_000252_260 0.1931737124 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
20 Hb_001619_090 0.1934338235 - - heat shock protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000679_030 Hb_000679_030 Hb_002716_110 Hb_002716_110 Hb_000679_030--Hb_002716_110 Hb_005488_130 Hb_005488_130 Hb_000679_030--Hb_005488_130 Hb_056196_010 Hb_056196_010 Hb_000679_030--Hb_056196_010 Hb_164945_020 Hb_164945_020 Hb_000679_030--Hb_164945_020 Hb_000069_690 Hb_000069_690 Hb_000679_030--Hb_000069_690 Hb_002397_050 Hb_002397_050 Hb_000679_030--Hb_002397_050 Hb_002716_110--Hb_002397_050 Hb_005493_010 Hb_005493_010 Hb_002716_110--Hb_005493_010 Hb_002817_050 Hb_002817_050 Hb_002716_110--Hb_002817_050 Hb_003688_140 Hb_003688_140 Hb_002716_110--Hb_003688_140 Hb_000054_030 Hb_000054_030 Hb_002716_110--Hb_000054_030 Hb_000227_280 Hb_000227_280 Hb_005488_130--Hb_000227_280 Hb_000140_060 Hb_000140_060 Hb_005488_130--Hb_000140_060 Hb_000272_030 Hb_000272_030 Hb_005488_130--Hb_000272_030 Hb_004678_010 Hb_004678_010 Hb_005488_130--Hb_004678_010 Hb_007894_070 Hb_007894_070 Hb_005488_130--Hb_007894_070 Hb_001153_100 Hb_001153_100 Hb_005488_130--Hb_001153_100 Hb_056196_010--Hb_002716_110 Hb_001014_020 Hb_001014_020 Hb_056196_010--Hb_001014_020 Hb_074109_010 Hb_074109_010 Hb_056196_010--Hb_074109_010 Hb_019762_060 Hb_019762_060 Hb_056196_010--Hb_019762_060 Hb_000018_140 Hb_000018_140 Hb_056196_010--Hb_000018_140 Hb_005183_040 Hb_005183_040 Hb_164945_020--Hb_005183_040 Hb_114917_010 Hb_114917_010 Hb_164945_020--Hb_114917_010 Hb_001369_390 Hb_001369_390 Hb_164945_020--Hb_001369_390 Hb_003058_170 Hb_003058_170 Hb_164945_020--Hb_003058_170 Hb_012132_020 Hb_012132_020 Hb_164945_020--Hb_012132_020 Hb_000922_350 Hb_000922_350 Hb_000069_690--Hb_000922_350 Hb_000252_260 Hb_000252_260 Hb_000069_690--Hb_000252_260 Hb_000659_040 Hb_000659_040 Hb_000069_690--Hb_000659_040 Hb_000069_690--Hb_000272_030 Hb_000326_080 Hb_000326_080 Hb_000069_690--Hb_000326_080 Hb_000856_200 Hb_000856_200 Hb_000069_690--Hb_000856_200 Hb_002397_050--Hb_000054_030 Hb_000457_250 Hb_000457_250 Hb_002397_050--Hb_000457_250 Hb_000115_360 Hb_000115_360 Hb_002397_050--Hb_000115_360 Hb_004032_110 Hb_004032_110 Hb_002397_050--Hb_004032_110 Hb_006736_050 Hb_006736_050 Hb_002397_050--Hb_006736_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.276759 8.01173 10.0418 15.4201 0.253313 0.191961
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.33863 6.21015 0.0952534 2.70477 18.2879

CAGE analysis