Hb_164945_020

Information

Type -
Description -
Location Contig164945: 12721-18254
Sequence    

Annotation

kegg
ID pop:POPTR_0019s12550g
description POPTRDRAFT_738961; calmodulin-binding family protein
nr
ID XP_012065034.1
description PREDICTED: protein IQ-DOMAIN 14 [Jatropha curcas]
swissprot
ID Q8LPG9
description Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQD14 PE=1 SV=1
trembl
ID A0A067L728
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05703 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15178: 12707-18345
cDNA
(Sanger)
(ID:Location)		 014_O20.ab1: 15651-18123 , 034_P15.ab1: 15212-16678 , 041_D07.ab1: 15186-16678

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_164945_020 0.0 - - PREDICTED: protein IQ-DOMAIN 14 [Jatropha curcas]
2 Hb_005183_040 0.1248083374 desease resistance Gene Name: NB-ARC Disease resistance protein RPM1, putative [Ricinus communis]
3 Hb_114917_010 0.1325845633 - - PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic [Jatropha curcas]
4 Hb_001369_390 0.1431677584 - - Glycerol-3-phosphate transporter, putative [Ricinus communis]
5 Hb_003058_170 0.1477808722 - - PREDICTED: F-box protein At2g26850 isoform X1 [Jatropha curcas]
6 Hb_012132_020 0.1481155907 - - glutamine synthetase [Hevea brasiliensis]
7 Hb_000679_030 0.1542692386 transcription factor TF Family: bZIP PREDICTED: transcription factor HY5 [Jatropha curcas]
8 Hb_003147_040 0.1564524686 - - PREDICTED: probable calcium-binding protein CML18 [Jatropha curcas]
9 Hb_002095_020 0.1585411686 - - PREDICTED: glutamate receptor 3.4-like isoform X1 [Jatropha curcas]
10 Hb_028396_020 0.1611403662 - - PREDICTED: ras-related protein Rab7 [Jatropha curcas]
11 Hb_020378_020 0.1668267666 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
12 Hb_001008_080 0.1673627789 - - PREDICTED: acyl-protein thioesterase 2 [Jatropha curcas]
13 Hb_002817_050 0.1673815939 transcription factor TF Family: Orphans hypothetical protein POPTR_0004s16810g, partial [Populus trichocarpa]
14 Hb_000922_350 0.1685272883 - - PREDICTED: uncharacterized protein LOC105640367 [Jatropha curcas]
15 Hb_000659_040 0.1688184625 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
16 Hb_000116_530 0.1690588946 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A reductase RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A reductase 3; Short=HMG-CoA reductase 3 [Hevea brasiliensis]
17 Hb_000069_690 0.1696548208 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF6 [Jatropha curcas]
18 Hb_009222_080 0.1702302303 - - RING-H2 finger protein ATL2J, putative [Ricinus communis]
19 Hb_163950_050 0.1702345126 - - protein binding protein, putative [Ricinus communis]
20 Hb_002613_040 0.1711943501 - - phosphate translocator-related family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_164945_020 Hb_164945_020 Hb_005183_040 Hb_005183_040 Hb_164945_020--Hb_005183_040 Hb_114917_010 Hb_114917_010 Hb_164945_020--Hb_114917_010 Hb_001369_390 Hb_001369_390 Hb_164945_020--Hb_001369_390 Hb_003058_170 Hb_003058_170 Hb_164945_020--Hb_003058_170 Hb_012132_020 Hb_012132_020 Hb_164945_020--Hb_012132_020 Hb_000679_030 Hb_000679_030 Hb_164945_020--Hb_000679_030 Hb_002636_070 Hb_002636_070 Hb_005183_040--Hb_002636_070 Hb_000917_210 Hb_000917_210 Hb_005183_040--Hb_000917_210 Hb_000959_010 Hb_000959_010 Hb_005183_040--Hb_000959_010 Hb_011242_010 Hb_011242_010 Hb_005183_040--Hb_011242_010 Hb_003145_010 Hb_003145_010 Hb_005183_040--Hb_003145_010 Hb_002613_040 Hb_002613_040 Hb_114917_010--Hb_002613_040 Hb_003097_220 Hb_003097_220 Hb_114917_010--Hb_003097_220 Hb_114917_010--Hb_003058_170 Hb_020378_020 Hb_020378_020 Hb_114917_010--Hb_020378_020 Hb_028396_020 Hb_028396_020 Hb_114917_010--Hb_028396_020 Hb_001916_150 Hb_001916_150 Hb_114917_010--Hb_001916_150 Hb_002095_020 Hb_002095_020 Hb_001369_390--Hb_002095_020 Hb_000784_060 Hb_000784_060 Hb_001369_390--Hb_000784_060 Hb_004374_030 Hb_004374_030 Hb_001369_390--Hb_004374_030 Hb_016277_030 Hb_016277_030 Hb_001369_390--Hb_016277_030 Hb_000836_030 Hb_000836_030 Hb_001369_390--Hb_000836_030 Hb_001046_030 Hb_001046_030 Hb_001369_390--Hb_001046_030 Hb_000076_060 Hb_000076_060 Hb_003058_170--Hb_000076_060 Hb_003018_150 Hb_003018_150 Hb_003058_170--Hb_003018_150 Hb_002713_060 Hb_002713_060 Hb_003058_170--Hb_002713_060 Hb_001210_060 Hb_001210_060 Hb_003058_170--Hb_001210_060 Hb_000847_030 Hb_000847_030 Hb_003058_170--Hb_000847_030 Hb_029223_010 Hb_029223_010 Hb_003058_170--Hb_029223_010 Hb_012132_020--Hb_005183_040 Hb_000210_040 Hb_000210_040 Hb_012132_020--Hb_000210_040 Hb_005493_010 Hb_005493_010 Hb_012132_020--Hb_005493_010 Hb_002716_110 Hb_002716_110 Hb_012132_020--Hb_002716_110 Hb_002817_050 Hb_002817_050 Hb_012132_020--Hb_002817_050 Hb_000679_030--Hb_002716_110 Hb_005488_130 Hb_005488_130 Hb_000679_030--Hb_005488_130 Hb_056196_010 Hb_056196_010 Hb_000679_030--Hb_056196_010 Hb_000069_690 Hb_000069_690 Hb_000679_030--Hb_000069_690 Hb_002397_050 Hb_002397_050 Hb_000679_030--Hb_002397_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.551641 35.9727 36.7208 93.1479 0.332686 0.604691
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.231316 16.1328 0.188576 20.1976 112.208

CAGE analysis