Hb_012132_020

Information

Type -
Description -
Location Contig12132: 13974-17545
Sequence    

Annotation

kegg
ID tcc:TCM_017447
description Glutamine synthase clone R1, 1,ATGLN1,1 isoform 1
nr
ID AAB61597.1
description glutamine synthetase [Hevea brasiliensis]
swissprot
ID P51119
description Glutamine synthetase cytosolic isozyme 2 OS=Vitis vinifera GN=GS1-2 PE=2 SV=1
trembl
ID O22331
description Glutamine synthetase OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0004356
description glutamine synthetase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06533: 14312-17508 , PASA_asmbl_06534: 17203-38853
cDNA
(Sanger)
(ID:Location)		 008_A05.ab1: 14338-15693 , 040_E09.ab1: 14336-16396

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012132_020 0.0 - - glutamine synthetase [Hevea brasiliensis]
2 Hb_005183_040 0.1379308718 desease resistance Gene Name: NB-ARC Disease resistance protein RPM1, putative [Ricinus communis]
3 Hb_000210_040 0.148030658 - - PREDICTED: putative HVA22-like protein g [Jatropha curcas]
4 Hb_164945_020 0.1481155907 - - PREDICTED: protein IQ-DOMAIN 14 [Jatropha curcas]
5 Hb_005493_010 0.1500611648 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
6 Hb_002716_110 0.1558717215 - - PREDICTED: interaptin [Jatropha curcas]
7 Hb_002817_050 0.1560962971 transcription factor TF Family: Orphans hypothetical protein POPTR_0004s16810g, partial [Populus trichocarpa]
8 Hb_000386_050 0.1572233511 - - PREDICTED: 2-isopropylmalate synthase 2, chloroplastic-like [Jatropha curcas]
9 Hb_000077_400 0.1581536052 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
10 Hb_006414_010 0.1612672532 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 9 [Jatropha curcas]
11 Hb_007894_070 0.1631236869 - - PREDICTED: uncharacterized protein LOC105632955 [Jatropha curcas]
12 Hb_004007_200 0.1694330995 - - PREDICTED: BTB/POZ domain-containing protein NPY5 [Jatropha curcas]
13 Hb_001054_060 0.1700579786 - - PREDICTED: dihydropyrimidine dehydrogenase [NADP(+)] [Jatropha curcas]
14 Hb_000230_170 0.1702091321 - - PREDICTED: histidine-containing phosphotransfer protein 1 [Jatropha curcas]
15 Hb_002999_140 0.1704766616 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
16 Hb_004864_010 0.1734651908 - - hypothetical protein CICLE_v10003960mg, partial [Citrus clementina]
17 Hb_000054_030 0.1736137361 - - hypothetical protein POPTR_0010s17680g [Populus trichocarpa]
18 Hb_002397_050 0.1737425281 - - PREDICTED: ACT domain-containing protein ACR4 isoform X2 [Jatropha curcas]
19 Hb_000679_030 0.1747033289 transcription factor TF Family: bZIP PREDICTED: transcription factor HY5 [Jatropha curcas]
20 Hb_000917_210 0.1787050781 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_012132_020 Hb_012132_020 Hb_005183_040 Hb_005183_040 Hb_012132_020--Hb_005183_040 Hb_000210_040 Hb_000210_040 Hb_012132_020--Hb_000210_040 Hb_164945_020 Hb_164945_020 Hb_012132_020--Hb_164945_020 Hb_005493_010 Hb_005493_010 Hb_012132_020--Hb_005493_010 Hb_002716_110 Hb_002716_110 Hb_012132_020--Hb_002716_110 Hb_002817_050 Hb_002817_050 Hb_012132_020--Hb_002817_050 Hb_005183_040--Hb_164945_020 Hb_002636_070 Hb_002636_070 Hb_005183_040--Hb_002636_070 Hb_000917_210 Hb_000917_210 Hb_005183_040--Hb_000917_210 Hb_000959_010 Hb_000959_010 Hb_005183_040--Hb_000959_010 Hb_011242_010 Hb_011242_010 Hb_005183_040--Hb_011242_010 Hb_003145_010 Hb_003145_010 Hb_005183_040--Hb_003145_010 Hb_007894_070 Hb_007894_070 Hb_000210_040--Hb_007894_070 Hb_003607_140 Hb_003607_140 Hb_000210_040--Hb_003607_140 Hb_006414_010 Hb_006414_010 Hb_000210_040--Hb_006414_010 Hb_004421_010 Hb_004421_010 Hb_000210_040--Hb_004421_010 Hb_003879_020 Hb_003879_020 Hb_000210_040--Hb_003879_020 Hb_000659_040 Hb_000659_040 Hb_000210_040--Hb_000659_040 Hb_114917_010 Hb_114917_010 Hb_164945_020--Hb_114917_010 Hb_001369_390 Hb_001369_390 Hb_164945_020--Hb_001369_390 Hb_003058_170 Hb_003058_170 Hb_164945_020--Hb_003058_170 Hb_000679_030 Hb_000679_030 Hb_164945_020--Hb_000679_030 Hb_005493_010--Hb_002817_050 Hb_030827_010 Hb_030827_010 Hb_005493_010--Hb_030827_010 Hb_001278_090 Hb_001278_090 Hb_005493_010--Hb_001278_090 Hb_002949_020 Hb_002949_020 Hb_005493_010--Hb_002949_020 Hb_002235_110 Hb_002235_110 Hb_005493_010--Hb_002235_110 Hb_074197_030 Hb_074197_030 Hb_005493_010--Hb_074197_030 Hb_002716_110--Hb_000679_030 Hb_002397_050 Hb_002397_050 Hb_002716_110--Hb_002397_050 Hb_002716_110--Hb_005493_010 Hb_002716_110--Hb_002817_050 Hb_003688_140 Hb_003688_140 Hb_002716_110--Hb_003688_140 Hb_000054_030 Hb_000054_030 Hb_002716_110--Hb_000054_030 Hb_000901_010 Hb_000901_010 Hb_002817_050--Hb_000901_010 Hb_000181_220 Hb_000181_220 Hb_002817_050--Hb_000181_220 Hb_004374_160 Hb_004374_160 Hb_002817_050--Hb_004374_160 Hb_010557_020 Hb_010557_020 Hb_002817_050--Hb_010557_020 Hb_000162_200 Hb_000162_200 Hb_002817_050--Hb_000162_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.755041 133.165 169.459 204.846 0.925536 0.881283
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.95163 76.0776 8.88205 131.554 357.446

CAGE analysis