Hb_011242_010

Information

Type -
Description -
Location Contig11242: 4122-6803
Sequence    

Annotation

kegg
ID pop:POPTR_0014s08280g
description POPTRDRAFT_898169; hypothetical protein
nr
ID XP_012083353.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2 [Jatropha curcas]
swissprot
ID Q39203
description G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2 OS=Arabidopsis thaliana GN=SD22 PE=1 SV=1
trembl
ID A0A067K9W1
description Serine/threonine-protein kinase OS=Jatropha curcas GN=JCGZ_14375 PE=3 SV=1
Gene Ontology
ID GO:0004674
description g-type lectin s-receptor-like serine threonine-protein kinase sd2-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03825: 4018-4206 , PASA_asmbl_03826: 4321-4778 , PASA_asmbl_03827: 5458-5851
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011242_010 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2 [Jatropha curcas]
2 Hb_003145_010 0.0966254428 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g59780 [Jatropha curcas]
3 Hb_114917_010 0.1314914553 - - PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic [Jatropha curcas]
4 Hb_005183_040 0.135232829 desease resistance Gene Name: NB-ARC Disease resistance protein RPM1, putative [Ricinus communis]
5 Hb_097335_010 0.1355250293 - - abhydrolase domain containing, putative [Ricinus communis]
6 Hb_000979_260 0.1378559148 - - ARF GTPase activator, putative [Ricinus communis]
7 Hb_030827_010 0.1397332124 transcription factor TF Family: HB Homeobox-leucine zipper ROC6 [Gossypium arboreum]
8 Hb_000959_010 0.1402201025 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
9 Hb_000917_210 0.1404376043 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003058_170 0.1409455662 - - PREDICTED: F-box protein At2g26850 isoform X1 [Jatropha curcas]
11 Hb_001486_100 0.1422619433 - - tubulin alpha chain, putative [Ricinus communis]
12 Hb_020141_030 0.1423594027 - - solanesyl diphosphate synthase, putative [Ricinus communis]
13 Hb_001278_090 0.1445805658 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
14 Hb_002636_070 0.1448293678 - - PREDICTED: putative U-box domain-containing protein 42 [Jatropha curcas]
15 Hb_004724_170 0.1455074834 - - PREDICTED: rho GTPase-activating protein 1 [Jatropha curcas]
16 Hb_003147_040 0.1460717423 - - PREDICTED: probable calcium-binding protein CML18 [Jatropha curcas]
17 Hb_016924_010 0.1472575294 - - conserved hypothetical protein [Ricinus communis]
18 Hb_029223_010 0.1479301015 - - PREDICTED: ACT domain-containing protein ACR10 [Jatropha curcas]
19 Hb_003097_220 0.1520285226 - - hypothetical protein POPTR_0001s06150g [Populus trichocarpa]
20 Hb_002235_110 0.154366069 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]

Gene co-expression network

sample Hb_011242_010 Hb_011242_010 Hb_003145_010 Hb_003145_010 Hb_011242_010--Hb_003145_010 Hb_114917_010 Hb_114917_010 Hb_011242_010--Hb_114917_010 Hb_005183_040 Hb_005183_040 Hb_011242_010--Hb_005183_040 Hb_097335_010 Hb_097335_010 Hb_011242_010--Hb_097335_010 Hb_000979_260 Hb_000979_260 Hb_011242_010--Hb_000979_260 Hb_030827_010 Hb_030827_010 Hb_011242_010--Hb_030827_010 Hb_003145_010--Hb_030827_010 Hb_001417_060 Hb_001417_060 Hb_003145_010--Hb_001417_060 Hb_000627_050 Hb_000627_050 Hb_003145_010--Hb_000627_050 Hb_029223_010 Hb_029223_010 Hb_003145_010--Hb_029223_010 Hb_016924_010 Hb_016924_010 Hb_003145_010--Hb_016924_010 Hb_002613_040 Hb_002613_040 Hb_114917_010--Hb_002613_040 Hb_003097_220 Hb_003097_220 Hb_114917_010--Hb_003097_220 Hb_003058_170 Hb_003058_170 Hb_114917_010--Hb_003058_170 Hb_020378_020 Hb_020378_020 Hb_114917_010--Hb_020378_020 Hb_028396_020 Hb_028396_020 Hb_114917_010--Hb_028396_020 Hb_001916_150 Hb_001916_150 Hb_114917_010--Hb_001916_150 Hb_164945_020 Hb_164945_020 Hb_005183_040--Hb_164945_020 Hb_002636_070 Hb_002636_070 Hb_005183_040--Hb_002636_070 Hb_000917_210 Hb_000917_210 Hb_005183_040--Hb_000917_210 Hb_000959_010 Hb_000959_010 Hb_005183_040--Hb_000959_010 Hb_005183_040--Hb_003145_010 Hb_002724_010 Hb_002724_010 Hb_097335_010--Hb_002724_010 Hb_001538_080 Hb_001538_080 Hb_097335_010--Hb_001538_080 Hb_097335_010--Hb_030827_010 Hb_097335_010--Hb_003145_010 Hb_000977_020 Hb_000977_020 Hb_097335_010--Hb_000977_020 Hb_003835_080 Hb_003835_080 Hb_097335_010--Hb_003835_080 Hb_003226_200 Hb_003226_200 Hb_000979_260--Hb_003226_200 Hb_001754_120 Hb_001754_120 Hb_000979_260--Hb_001754_120 Hb_033152_110 Hb_033152_110 Hb_000979_260--Hb_033152_110 Hb_004724_170 Hb_004724_170 Hb_000979_260--Hb_004724_170 Hb_000622_060 Hb_000622_060 Hb_000979_260--Hb_000622_060 Hb_069696_020 Hb_069696_020 Hb_030827_010--Hb_069696_020 Hb_030827_010--Hb_000627_050 Hb_030827_010--Hb_016924_010 Hb_000703_120 Hb_000703_120 Hb_030827_010--Hb_000703_120 Hb_001278_090 Hb_001278_090 Hb_030827_010--Hb_001278_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0288688 0.915808 1.67419 2.30735 0.0279582 0.0648297
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0163743 0.0773101 0.344374 0.808038 3.73056

CAGE analysis