Hb_000917_210

Information

Type -
Description -
Location Contig917: 220195-225586
Sequence    

Annotation

kegg
ID rcu:RCOM_0704660
description hypothetical protein
nr
ID XP_002524394.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LI74
description Protein CHUP1, chloroplastic OS=Arabidopsis thaliana GN=CHUP1 PE=1 SV=1
trembl
ID B9SEH5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0704660 PE=4 SV=1
Gene Ontology
ID GO:0009657
description hydroxyproline-rich glycoprotein family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000917_210 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000594_130 0.0943495464 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_001486_100 0.1150274328 - - tubulin alpha chain, putative [Ricinus communis]
4 Hb_000130_480 0.1176565892 - - PREDICTED: histone-lysine N-methyltransferase SETD1B [Jatropha curcas]
5 Hb_003145_010 0.1244107729 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g59780 [Jatropha curcas]
6 Hb_143629_200 0.124494629 - - hypothetical protein POPTR_0013s00300g [Populus trichocarpa]
7 Hb_003607_140 0.1252166087 - - 3-ketoacyl-CoA thiolase B, putative [Ricinus communis]
8 Hb_001054_060 0.1310370671 - - PREDICTED: dihydropyrimidine dehydrogenase [NADP(+)] [Jatropha curcas]
9 Hb_008494_090 0.1322096283 - - PREDICTED: uncharacterized protein LOC105636007 [Jatropha curcas]
10 Hb_005183_040 0.1326974163 desease resistance Gene Name: NB-ARC Disease resistance protein RPM1, putative [Ricinus communis]
11 Hb_002110_090 0.1355091897 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
12 Hb_000326_080 0.1365212651 - - lrr receptor protein kinase, putative [Ricinus communis]
13 Hb_046117_030 0.1365790294 - - sialyltransferase, putative [Ricinus communis]
14 Hb_000959_010 0.1368893838 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
15 Hb_003177_090 0.1390974984 - - PREDICTED: filament-like plant protein 4 [Jatropha curcas]
16 Hb_002636_070 0.1399834058 - - PREDICTED: putative U-box domain-containing protein 42 [Jatropha curcas]
17 Hb_000853_050 0.1402790834 - - PREDICTED: putative GTP diphosphokinase RSH1, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_011242_010 0.1404376043 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2 [Jatropha curcas]
19 Hb_006414_010 0.1409321674 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 9 [Jatropha curcas]
20 Hb_000694_050 0.1413124378 - - Nuclease PA3, putative [Ricinus communis]

Gene co-expression network

sample Hb_000917_210 Hb_000917_210 Hb_000594_130 Hb_000594_130 Hb_000917_210--Hb_000594_130 Hb_001486_100 Hb_001486_100 Hb_000917_210--Hb_001486_100 Hb_000130_480 Hb_000130_480 Hb_000917_210--Hb_000130_480 Hb_003145_010 Hb_003145_010 Hb_000917_210--Hb_003145_010 Hb_143629_200 Hb_143629_200 Hb_000917_210--Hb_143629_200 Hb_003607_140 Hb_003607_140 Hb_000917_210--Hb_003607_140 Hb_003177_090 Hb_003177_090 Hb_000594_130--Hb_003177_090 Hb_000594_130--Hb_000130_480 Hb_046117_030 Hb_046117_030 Hb_000594_130--Hb_046117_030 Hb_000237_160 Hb_000237_160 Hb_000594_130--Hb_000237_160 Hb_002110_090 Hb_002110_090 Hb_000594_130--Hb_002110_090 Hb_006414_010 Hb_006414_010 Hb_001486_100--Hb_006414_010 Hb_002740_100 Hb_002740_100 Hb_001486_100--Hb_002740_100 Hb_000326_080 Hb_000326_080 Hb_001486_100--Hb_000326_080 Hb_002838_010 Hb_002838_010 Hb_001486_100--Hb_002838_010 Hb_001486_100--Hb_003177_090 Hb_002635_010 Hb_002635_010 Hb_000130_480--Hb_002635_010 Hb_006198_040 Hb_006198_040 Hb_000130_480--Hb_006198_040 Hb_004607_160 Hb_004607_160 Hb_000130_480--Hb_004607_160 Hb_124579_020 Hb_124579_020 Hb_000130_480--Hb_124579_020 Hb_003142_080 Hb_003142_080 Hb_000130_480--Hb_003142_080 Hb_000836_030 Hb_000836_030 Hb_000130_480--Hb_000836_030 Hb_030827_010 Hb_030827_010 Hb_003145_010--Hb_030827_010 Hb_011242_010 Hb_011242_010 Hb_003145_010--Hb_011242_010 Hb_001417_060 Hb_001417_060 Hb_003145_010--Hb_001417_060 Hb_000627_050 Hb_000627_050 Hb_003145_010--Hb_000627_050 Hb_029223_010 Hb_029223_010 Hb_003145_010--Hb_029223_010 Hb_016924_010 Hb_016924_010 Hb_003145_010--Hb_016924_010 Hb_001706_020 Hb_001706_020 Hb_143629_200--Hb_001706_020 Hb_000215_290 Hb_000215_290 Hb_143629_200--Hb_000215_290 Hb_002010_070 Hb_002010_070 Hb_143629_200--Hb_002010_070 Hb_144449_010 Hb_144449_010 Hb_143629_200--Hb_144449_010 Hb_000868_130 Hb_000868_130 Hb_143629_200--Hb_000868_130 Hb_000959_010 Hb_000959_010 Hb_143629_200--Hb_000959_010 Hb_010174_180 Hb_010174_180 Hb_003607_140--Hb_010174_180 Hb_006469_090 Hb_006469_090 Hb_003607_140--Hb_006469_090 Hb_001439_010 Hb_001439_010 Hb_003607_140--Hb_001439_010 Hb_002635_020 Hb_002635_020 Hb_003607_140--Hb_002635_020 Hb_002316_020 Hb_002316_020 Hb_003607_140--Hb_002316_020 Hb_000210_040 Hb_000210_040 Hb_003607_140--Hb_000210_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0288827 0.551114 0.795108 0.940012 0.0155663 0.09566
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0352908 0.0416549 0.0264706 0.656132 1.74138

CAGE analysis