Hb_003177_090

Information

Type -
Description -
Location Contig3177: 100835-107317
Sequence    

Annotation

kegg
ID rcu:RCOM_1597360
description Myosin heavy chain, striated muscle, putative
nr
ID XP_012073826.1
description PREDICTED: filament-like plant protein 4 [Jatropha curcas]
swissprot
ID Q0WSY2
description Filament-like plant protein 4 OS=Arabidopsis thaliana GN=FPP4 PE=1 SV=1
trembl
ID A0A067KYK2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08235 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33477: 100836-107737 , PASA_asmbl_33478: 100836-107348
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003177_090 0.0 - - PREDICTED: filament-like plant protein 4 [Jatropha curcas]
2 Hb_006040_170 0.0890305359 - - NADH-ubiquinone oxidoreductase chain [Medicago truncatula]
3 Hb_001689_030 0.0960683651 - - PREDICTED: J domain-containing protein required for chloroplast accumulation response 1 [Jatropha curcas]
4 Hb_002344_080 0.1028272352 - - PREDICTED: protein YLS2-like [Populus euphratica]
5 Hb_000757_020 0.1050375082 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 2 [Jatropha curcas]
6 Hb_000418_150 0.1105135444 - - ABC transporter family protein [Hevea brasiliensis]
7 Hb_143629_200 0.1151532893 - - hypothetical protein POPTR_0013s00300g [Populus trichocarpa]
8 Hb_000438_020 0.1153843517 - - leucine-rich repeat-containing protein 2, lrrc2, putative [Ricinus communis]
9 Hb_049293_010 0.1157479137 - - kinase, putative [Ricinus communis]
10 Hb_001486_100 0.1160226492 - - tubulin alpha chain, putative [Ricinus communis]
11 Hb_001195_250 0.1172717155 - - lrr receptor protein kinase, putative [Ricinus communis]
12 Hb_002888_040 0.1183089067 - - hypothetical protein B456_009G267200 [Gossypium raimondii]
13 Hb_000594_130 0.1186001365 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_000237_160 0.1214647237 - - BEL1-like homeodomain protein 1 [Morus notabilis]
15 Hb_002110_090 0.1224983209 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
16 Hb_000103_410 0.1288637565 - - PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Jatropha curcas]
17 Hb_003007_030 0.13171941 - - -
18 Hb_000714_120 0.1327270006 - - PREDICTED: vacuolar-sorting receptor 6-like [Jatropha curcas]
19 Hb_002740_100 0.1351477496 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
20 Hb_000959_010 0.1353427888 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003177_090 Hb_003177_090 Hb_006040_170 Hb_006040_170 Hb_003177_090--Hb_006040_170 Hb_001689_030 Hb_001689_030 Hb_003177_090--Hb_001689_030 Hb_002344_080 Hb_002344_080 Hb_003177_090--Hb_002344_080 Hb_000757_020 Hb_000757_020 Hb_003177_090--Hb_000757_020 Hb_000418_150 Hb_000418_150 Hb_003177_090--Hb_000418_150 Hb_143629_200 Hb_143629_200 Hb_003177_090--Hb_143629_200 Hb_006040_170--Hb_143629_200 Hb_001486_100 Hb_001486_100 Hb_006040_170--Hb_001486_100 Hb_000959_010 Hb_000959_010 Hb_006040_170--Hb_000959_010 Hb_060198_010 Hb_060198_010 Hb_006040_170--Hb_060198_010 Hb_006040_170--Hb_002344_080 Hb_001689_030--Hb_002344_080 Hb_000103_410 Hb_000103_410 Hb_001689_030--Hb_000103_410 Hb_002888_040 Hb_002888_040 Hb_001689_030--Hb_002888_040 Hb_000816_160 Hb_000816_160 Hb_001689_030--Hb_000816_160 Hb_003007_030 Hb_003007_030 Hb_001689_030--Hb_003007_030 Hb_002344_080--Hb_000816_160 Hb_000181_230 Hb_000181_230 Hb_002344_080--Hb_000181_230 Hb_002344_080--Hb_143629_200 Hb_002344_080--Hb_000103_410 Hb_049293_010 Hb_049293_010 Hb_000757_020--Hb_049293_010 Hb_000757_020--Hb_000418_150 Hb_155150_010 Hb_155150_010 Hb_000757_020--Hb_155150_010 Hb_000714_120 Hb_000714_120 Hb_000757_020--Hb_000714_120 Hb_000366_030 Hb_000366_030 Hb_000757_020--Hb_000366_030 Hb_000438_020 Hb_000438_020 Hb_000418_150--Hb_000438_020 Hb_004864_020 Hb_004864_020 Hb_000418_150--Hb_004864_020 Hb_001496_120 Hb_001496_120 Hb_000418_150--Hb_001496_120 Hb_002099_060 Hb_002099_060 Hb_000418_150--Hb_002099_060 Hb_001706_020 Hb_001706_020 Hb_143629_200--Hb_001706_020 Hb_000215_290 Hb_000215_290 Hb_143629_200--Hb_000215_290 Hb_002010_070 Hb_002010_070 Hb_143629_200--Hb_002010_070 Hb_144449_010 Hb_144449_010 Hb_143629_200--Hb_144449_010 Hb_000868_130 Hb_000868_130 Hb_143629_200--Hb_000868_130 Hb_143629_200--Hb_000959_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.51358 38.7859 21.7403 39.1618 3.03717 2.83329
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.692987 0.545353 1.02914 29.0311 64.5135

CAGE analysis