Hb_001689_030

Information

Type -
Description -
Location Contig1689: 83989-89141
Sequence    

Annotation

kegg
ID rcu:RCOM_1593810
description heat shock protein binding protein, putative
nr
ID XP_012071800.1
description PREDICTED: J domain-containing protein required for chloroplast accumulation response 1 [Jatropha curcas]
swissprot
ID Q0WQ57
description Auxilin-related protein 2 OS=Arabidopsis thaliana GN=At4g12770 PE=1 SV=1
trembl
ID A0A067L1W3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04400 PE=4 SV=1
Gene Ontology
ID GO:0009987
description j domain-containing protein required for chloroplast accumulation response 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15659: 84013-89005 , PASA_asmbl_15660: 89312-89567
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001689_030 0.0 - - PREDICTED: J domain-containing protein required for chloroplast accumulation response 1 [Jatropha curcas]
2 Hb_002344_080 0.0793072091 - - PREDICTED: protein YLS2-like [Populus euphratica]
3 Hb_003177_090 0.0960683651 - - PREDICTED: filament-like plant protein 4 [Jatropha curcas]
4 Hb_000103_410 0.1010575615 - - PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Jatropha curcas]
5 Hb_002888_040 0.1048783117 - - hypothetical protein B456_009G267200 [Gossypium raimondii]
6 Hb_000816_160 0.1134471019 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
7 Hb_003007_030 0.1150286034 - - -
8 Hb_001486_100 0.1187958701 - - tubulin alpha chain, putative [Ricinus communis]
9 Hb_000438_020 0.12040396 - - leucine-rich repeat-containing protein 2, lrrc2, putative [Ricinus communis]
10 Hb_001195_230 0.1230536228 - - PREDICTED: 3-ketoacyl-CoA synthase 4 [Jatropha curcas]
11 Hb_025045_010 0.1239985715 - - catalytic, putative [Ricinus communis]
12 Hb_143629_200 0.1249104699 - - hypothetical protein POPTR_0013s00300g [Populus trichocarpa]
13 Hb_000326_080 0.128201442 - - lrr receptor protein kinase, putative [Ricinus communis]
14 Hb_002849_180 0.1286721688 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
15 Hb_000365_220 0.1313416217 - - protein phosphatase-1, putative [Ricinus communis]
16 Hb_000215_290 0.1313596691 transcription factor TF Family: NAC PREDICTED: protein BEARSKIN2 isoform X2 [Jatropha curcas]
17 Hb_000096_110 0.1333769294 - - PREDICTED: uncharacterized protein LOC105787685 isoform X1 [Gossypium raimondii]
18 Hb_008494_090 0.1347703495 - - PREDICTED: uncharacterized protein LOC105636007 [Jatropha curcas]
19 Hb_006040_170 0.1353344792 - - NADH-ubiquinone oxidoreductase chain [Medicago truncatula]
20 Hb_005488_030 0.1354945471 - - F3F9.11 [Arabidopsis lyrata subsp. lyrata]

Gene co-expression network

sample Hb_001689_030 Hb_001689_030 Hb_002344_080 Hb_002344_080 Hb_001689_030--Hb_002344_080 Hb_003177_090 Hb_003177_090 Hb_001689_030--Hb_003177_090 Hb_000103_410 Hb_000103_410 Hb_001689_030--Hb_000103_410 Hb_002888_040 Hb_002888_040 Hb_001689_030--Hb_002888_040 Hb_000816_160 Hb_000816_160 Hb_001689_030--Hb_000816_160 Hb_003007_030 Hb_003007_030 Hb_001689_030--Hb_003007_030 Hb_002344_080--Hb_000816_160 Hb_002344_080--Hb_003177_090 Hb_000181_230 Hb_000181_230 Hb_002344_080--Hb_000181_230 Hb_143629_200 Hb_143629_200 Hb_002344_080--Hb_143629_200 Hb_002344_080--Hb_000103_410 Hb_006040_170 Hb_006040_170 Hb_003177_090--Hb_006040_170 Hb_000757_020 Hb_000757_020 Hb_003177_090--Hb_000757_020 Hb_000418_150 Hb_000418_150 Hb_003177_090--Hb_000418_150 Hb_003177_090--Hb_143629_200 Hb_001195_250 Hb_001195_250 Hb_000103_410--Hb_001195_250 Hb_000103_410--Hb_003177_090 Hb_025045_010 Hb_025045_010 Hb_000103_410--Hb_025045_010 Hb_002809_120 Hb_002809_120 Hb_000103_410--Hb_002809_120 Hb_000365_220 Hb_000365_220 Hb_002888_040--Hb_000365_220 Hb_026698_020 Hb_026698_020 Hb_002888_040--Hb_026698_020 Hb_003517_100 Hb_003517_100 Hb_002888_040--Hb_003517_100 Hb_001195_230 Hb_001195_230 Hb_002888_040--Hb_001195_230 Hb_001268_300 Hb_001268_300 Hb_002888_040--Hb_001268_300 Hb_000363_050 Hb_000363_050 Hb_000816_160--Hb_000363_050 Hb_003077_140 Hb_003077_140 Hb_000816_160--Hb_003077_140 Hb_000816_160--Hb_003007_030 Hb_004605_020 Hb_004605_020 Hb_000816_160--Hb_004605_020 Hb_001476_090 Hb_001476_090 Hb_003007_030--Hb_001476_090 Hb_083242_020 Hb_083242_020 Hb_003007_030--Hb_083242_020 Hb_003007_030--Hb_000418_150 Hb_003007_030--Hb_003177_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.717317 17.0634 13.306 13.515 1.62183 0.536791
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.245643 0.318381 0.348044 10.3456 22.1029

CAGE analysis