Hb_025045_010

Information

Type -
Description -
Location Contig25045: 12215-26594
Sequence    

Annotation

kegg
ID rcu:RCOM_1446130
description catalytic, putative
nr
ID XP_002512877.1
description catalytic, putative [Ricinus communis]
swissprot
ID Q9ZVN2
description Acyltransferase-like protein At1g54570, chloroplastic OS=Arabidopsis thaliana GN=At1g54570 PE=2 SV=1
trembl
ID B9RH18
description Catalytic, putative OS=Ricinus communis GN=RCOM_1446130 PE=4 SV=1
Gene Ontology
ID GO:0016746
description acyltransferase-like protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26199: 12036-26614
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025045_010 0.0 - - catalytic, putative [Ricinus communis]
2 Hb_001821_060 0.1051282726 - - PREDICTED: C-type lectin receptor-like tyrosine-protein kinase At1g52310 [Jatropha curcas]
3 Hb_013968_010 0.107581073 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
4 Hb_002026_030 0.1101149407 desease resistance Gene Name: NB-ARC PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
5 Hb_003912_080 0.1168205224 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
6 Hb_007765_130 0.1174720522 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic [Jatropha curcas]
7 Hb_002888_040 0.1183565788 - - hypothetical protein B456_009G267200 [Gossypium raimondii]
8 Hb_001969_130 0.1202847813 - - PREDICTED: molybdate transporter 2 [Jatropha curcas]
9 Hb_022425_050 0.1238955482 - - PREDICTED: probable lactoylglutathione lyase, chloroplast isoform X1 [Jatropha curcas]
10 Hb_001689_030 0.1239985715 - - PREDICTED: J domain-containing protein required for chloroplast accumulation response 1 [Jatropha curcas]
11 Hb_000365_220 0.1248823119 - - protein phosphatase-1, putative [Ricinus communis]
12 Hb_000635_050 0.1273106091 - - PREDICTED: F-box/kelch-repeat protein At1g67480 [Jatropha curcas]
13 Hb_008494_090 0.1279383688 - - PREDICTED: uncharacterized protein LOC105636007 [Jatropha curcas]
14 Hb_004346_040 0.1279410048 - - hypothetical protein POPTR_0016s06630g [Populus trichocarpa]
15 Hb_001865_010 0.1280929811 transcription factor TF Family: B3 hypothetical protein RCOM_0465210 [Ricinus communis]
16 Hb_000103_410 0.1294846773 - - PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Jatropha curcas]
17 Hb_000906_070 0.1303279566 - - PREDICTED: protein SCAR2-like isoform X1 [Jatropha curcas]
18 Hb_001486_100 0.1307543829 - - tubulin alpha chain, putative [Ricinus communis]
19 Hb_003687_010 0.1319163632 - - Cysteine-rich RLK 29, putative [Theobroma cacao]
20 Hb_001195_250 0.1331020503 - - lrr receptor protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_025045_010 Hb_025045_010 Hb_001821_060 Hb_001821_060 Hb_025045_010--Hb_001821_060 Hb_013968_010 Hb_013968_010 Hb_025045_010--Hb_013968_010 Hb_002026_030 Hb_002026_030 Hb_025045_010--Hb_002026_030 Hb_003912_080 Hb_003912_080 Hb_025045_010--Hb_003912_080 Hb_007765_130 Hb_007765_130 Hb_025045_010--Hb_007765_130 Hb_002888_040 Hb_002888_040 Hb_025045_010--Hb_002888_040 Hb_012033_010 Hb_012033_010 Hb_001821_060--Hb_012033_010 Hb_001821_060--Hb_013968_010 Hb_009193_010 Hb_009193_010 Hb_001821_060--Hb_009193_010 Hb_000256_160 Hb_000256_160 Hb_001821_060--Hb_000256_160 Hb_003226_090 Hb_003226_090 Hb_001821_060--Hb_003226_090 Hb_011188_010 Hb_011188_010 Hb_013968_010--Hb_011188_010 Hb_002383_050 Hb_002383_050 Hb_013968_010--Hb_002383_050 Hb_013968_010--Hb_003226_090 Hb_001514_240 Hb_001514_240 Hb_013968_010--Hb_001514_240 Hb_004346_040 Hb_004346_040 Hb_013968_010--Hb_004346_040 Hb_000665_200 Hb_000665_200 Hb_002026_030--Hb_000665_200 Hb_001969_130 Hb_001969_130 Hb_002026_030--Hb_001969_130 Hb_001124_140 Hb_001124_140 Hb_002026_030--Hb_001124_140 Hb_004052_110 Hb_004052_110 Hb_002026_030--Hb_004052_110 Hb_002675_080 Hb_002675_080 Hb_002026_030--Hb_002675_080 Hb_004678_010 Hb_004678_010 Hb_002026_030--Hb_004678_010 Hb_002909_100 Hb_002909_100 Hb_003912_080--Hb_002909_100 Hb_000230_470 Hb_000230_470 Hb_003912_080--Hb_000230_470 Hb_001999_320 Hb_001999_320 Hb_003912_080--Hb_001999_320 Hb_003912_080--Hb_004678_010 Hb_001948_090 Hb_001948_090 Hb_003912_080--Hb_001948_090 Hb_003912_080--Hb_002026_030 Hb_000042_050 Hb_000042_050 Hb_007765_130--Hb_000042_050 Hb_003055_070 Hb_003055_070 Hb_007765_130--Hb_003055_070 Hb_001365_030 Hb_001365_030 Hb_007765_130--Hb_001365_030 Hb_000005_100 Hb_000005_100 Hb_007765_130--Hb_000005_100 Hb_000679_080 Hb_000679_080 Hb_007765_130--Hb_000679_080 Hb_000093_140 Hb_000093_140 Hb_007765_130--Hb_000093_140 Hb_000365_220 Hb_000365_220 Hb_002888_040--Hb_000365_220 Hb_026698_020 Hb_026698_020 Hb_002888_040--Hb_026698_020 Hb_001689_030 Hb_001689_030 Hb_002888_040--Hb_001689_030 Hb_003517_100 Hb_003517_100 Hb_002888_040--Hb_003517_100 Hb_001195_230 Hb_001195_230 Hb_002888_040--Hb_001195_230 Hb_001268_300 Hb_001268_300 Hb_002888_040--Hb_001268_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.39619 8.64973 9.45395 7.7654 0.951521 1.28901
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.846696 0.384385 0.318016 5.36504 14.8403

CAGE analysis