Hb_002888_040

Information

Type -
Description -
Location Contig2888: 19209-23801
Sequence    

Annotation

kegg
ID zma:100216911
description pco139881; LOC100216911
nr
ID KJB59685.1
description hypothetical protein B456_009G267200 [Gossypium raimondii]
swissprot
ID O35954
description Membrane-associated phosphatidylinositol transfer protein 1 OS=Mus musculus GN=Pitpnm1 PE=1 SV=1
trembl
ID A0A0D2UUH9
description Gossypium raimondii chromosome 9, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_009G267200 PE=4 SV=1
Gene Ontology
ID GO:0009506
description phospholipase sgr2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002888_040 0.0 - - hypothetical protein B456_009G267200 [Gossypium raimondii]
2 Hb_000365_220 0.0939060546 - - protein phosphatase-1, putative [Ricinus communis]
3 Hb_026698_020 0.1034624547 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
4 Hb_001689_030 0.1048783117 - - PREDICTED: J domain-containing protein required for chloroplast accumulation response 1 [Jatropha curcas]
5 Hb_003517_100 0.1060683082 transcription factor TF Family: GRAS -
6 Hb_001195_230 0.1093882996 - - PREDICTED: 3-ketoacyl-CoA synthase 4 [Jatropha curcas]
7 Hb_001268_300 0.1123167102 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001307_200 0.1126760609 - - PREDICTED: uncharacterized protein LOC105644489 [Jatropha curcas]
9 Hb_073973_020 0.1136924408 - - PREDICTED: DIS3-like exonuclease 2 [Jatropha curcas]
10 Hb_000417_410 0.1142814021 - - PREDICTED: protein STICHEL-like 3 isoform X2 [Jatropha curcas]
11 Hb_001821_060 0.1158246373 - - PREDICTED: C-type lectin receptor-like tyrosine-protein kinase At1g52310 [Jatropha curcas]
12 Hb_042202_020 0.1169246404 - - Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]
13 Hb_003177_090 0.1183089067 - - PREDICTED: filament-like plant protein 4 [Jatropha curcas]
14 Hb_025045_010 0.1183565788 - - catalytic, putative [Ricinus communis]
15 Hb_000438_020 0.1209920692 - - leucine-rich repeat-containing protein 2, lrrc2, putative [Ricinus communis]
16 Hb_000522_010 0.1269669313 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Jatropha curcas]
17 Hb_008494_090 0.1303036699 - - PREDICTED: uncharacterized protein LOC105636007 [Jatropha curcas]
18 Hb_012033_010 0.1311822251 - - PREDICTED: histone H1.2-like [Jatropha curcas]
19 Hb_029748_020 0.13393095 - - PREDICTED: ent-kaur-16-ene synthase, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_001486_100 0.1341707511 - - tubulin alpha chain, putative [Ricinus communis]

Gene co-expression network

sample Hb_002888_040 Hb_002888_040 Hb_000365_220 Hb_000365_220 Hb_002888_040--Hb_000365_220 Hb_026698_020 Hb_026698_020 Hb_002888_040--Hb_026698_020 Hb_001689_030 Hb_001689_030 Hb_002888_040--Hb_001689_030 Hb_003517_100 Hb_003517_100 Hb_002888_040--Hb_003517_100 Hb_001195_230 Hb_001195_230 Hb_002888_040--Hb_001195_230 Hb_001268_300 Hb_001268_300 Hb_002888_040--Hb_001268_300 Hb_008494_090 Hb_008494_090 Hb_000365_220--Hb_008494_090 Hb_000522_010 Hb_000522_010 Hb_000365_220--Hb_000522_010 Hb_000417_410 Hb_000417_410 Hb_000365_220--Hb_000417_410 Hb_000365_220--Hb_003517_100 Hb_004525_020 Hb_004525_020 Hb_000365_220--Hb_004525_020 Hb_001514_240 Hb_001514_240 Hb_026698_020--Hb_001514_240 Hb_026698_020--Hb_000417_410 Hb_009449_100 Hb_009449_100 Hb_026698_020--Hb_009449_100 Hb_026698_020--Hb_001195_230 Hb_132840_030 Hb_132840_030 Hb_026698_020--Hb_132840_030 Hb_002344_080 Hb_002344_080 Hb_001689_030--Hb_002344_080 Hb_003177_090 Hb_003177_090 Hb_001689_030--Hb_003177_090 Hb_000103_410 Hb_000103_410 Hb_001689_030--Hb_000103_410 Hb_000816_160 Hb_000816_160 Hb_001689_030--Hb_000816_160 Hb_003007_030 Hb_003007_030 Hb_001689_030--Hb_003007_030 Hb_003517_100--Hb_001268_300 Hb_003517_100--Hb_000522_010 Hb_003517_100--Hb_000417_410 Hb_003517_100--Hb_008494_090 Hb_000096_110 Hb_000096_110 Hb_001195_230--Hb_000096_110 Hb_000007_440 Hb_000007_440 Hb_001195_230--Hb_000007_440 Hb_000320_450 Hb_000320_450 Hb_001195_230--Hb_000320_450 Hb_001195_230--Hb_001689_030 Hb_000417_280 Hb_000417_280 Hb_001268_300--Hb_000417_280 Hb_042202_020 Hb_042202_020 Hb_001268_300--Hb_042202_020 Hb_009193_060 Hb_009193_060 Hb_001268_300--Hb_009193_060 Hb_082683_010 Hb_082683_010 Hb_001268_300--Hb_082683_010 Hb_073973_020 Hb_073973_020 Hb_001268_300--Hb_073973_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.38146 17.1331 14.809 14.457 0.873075 1.80245
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.469915 1.03417 1.17083 15.4977 22.181

CAGE analysis