Hb_000320_450

Information

Type -
Description -
Location Contig320: 349603-351427
Sequence    

Annotation

kegg
ID pop:POPTR_0004s01510g
description POPTRDRAFT_647567; Peroxidase 42 precursor family protein
nr
ID ADR70870.1
description secretory peroxidase [Hevea brasiliensis]
swissprot
ID Q9SB81
description Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=1 SV=2
trembl
ID V5IV17
description Peroxidase OS=Hevea brasiliensis GN=Prx PE=2 SV=1
Gene Ontology
ID GO:0005623
description peroxidase 42

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33842: 349613-351531 , PASA_asmbl_33843: 350180-350771
cDNA
(Sanger)
(ID:Location)		 003_N15.ab1: 349633-350894 , 005_B21.ab1: 349614-350863 , 009_I13.ab1: 349633-350878 , 010_C12.ab1: 349633-350824 , 014_B14.ab1: 349654-350848 , 014_I23.ab1: 349633-350802 , 015_N09.ab1: 349654-350898 , 020_H23.ab1: 349633-350857 , 022_A05.ab1: 349613-350563 , 025_E01.ab1: 349633-350914 , 026_G24.ab1: 349627-350792 , 029_H16.ab1: 349626-350595 , 030_M12.ab1: 349654-350779 , 033_M04.ab1: 349633-350847 , 035_A10.ab1: 351228-351412 , 038_I04.ab1: 349633-350920 , 038_M15.ab1: 349627-350901 , 045_H01.ab1: 349631-350917 , 045_N16.ab1: 349633-350851 , 047_O24.ab1: 349633-350842 , 048_N18.ab1: 349631-350846 , 053_A09.ab1: 350933-351413 , 053_N14.ab1: 349633-350804

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000320_450 0.0 - - secretory peroxidase [Hevea brasiliensis]
2 Hb_002849_180 0.0984089075 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
3 Hb_000096_110 0.112914286 - - PREDICTED: uncharacterized protein LOC105787685 isoform X1 [Gossypium raimondii]
4 Hb_000007_440 0.1131145082 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
5 Hb_001195_230 0.1177142097 - - PREDICTED: 3-ketoacyl-CoA synthase 4 [Jatropha curcas]
6 Hb_002838_010 0.1187425665 - - AGPase large subunit protein [Hevea brasiliensis]
7 Hb_006970_170 0.1251908555 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
8 Hb_000230_360 0.1301534788 - - PREDICTED: BI1-like protein [Jatropha curcas]
9 Hb_001989_070 0.1337360815 - - PREDICTED: uncharacterized calcium-binding protein At1g02270 [Jatropha curcas]
10 Hb_007894_120 0.1362618429 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase-like isoform X1 [Jatropha curcas]
11 Hb_000613_250 0.1376753563 - - PREDICTED: nudix hydrolase 2-like [Jatropha curcas]
12 Hb_000500_230 0.1387115178 - - hypothetical protein RCOM_0634810 [Ricinus communis]
13 Hb_106089_010 0.1392549648 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
14 Hb_005582_030 0.1396307501 - - PREDICTED: protein N-lysine methyltransferase METTL21A-like [Jatropha curcas]
15 Hb_000477_110 0.1396467225 transcription factor TF Family: GRAS PREDICTED: DELLA protein SLR1-like [Jatropha curcas]
16 Hb_002316_020 0.1401383674 - - PREDICTED: uncharacterized protein LOC105640407 [Jatropha curcas]
17 Hb_001357_060 0.1405672595 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 18-like [Cicer arietinum]
18 Hb_012308_050 0.1410082078 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9-like [Jatropha curcas]
19 Hb_000654_050 0.1416619053 - - hypothetical protein POPTR_0005s07810g [Populus trichocarpa]
20 Hb_000061_310 0.1442103974 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000320_450 Hb_000320_450 Hb_002849_180 Hb_002849_180 Hb_000320_450--Hb_002849_180 Hb_000096_110 Hb_000096_110 Hb_000320_450--Hb_000096_110 Hb_000007_440 Hb_000007_440 Hb_000320_450--Hb_000007_440 Hb_001195_230 Hb_001195_230 Hb_000320_450--Hb_001195_230 Hb_002838_010 Hb_002838_010 Hb_000320_450--Hb_002838_010 Hb_006970_170 Hb_006970_170 Hb_000320_450--Hb_006970_170 Hb_002849_180--Hb_000007_440 Hb_006483_090 Hb_006483_090 Hb_002849_180--Hb_006483_090 Hb_007483_080 Hb_007483_080 Hb_002849_180--Hb_007483_080 Hb_000613_250 Hb_000613_250 Hb_002849_180--Hb_000613_250 Hb_012308_050 Hb_012308_050 Hb_002849_180--Hb_012308_050 Hb_000096_110--Hb_001195_230 Hb_000096_110--Hb_002838_010 Hb_001179_010 Hb_001179_010 Hb_000096_110--Hb_001179_010 Hb_002316_020 Hb_002316_020 Hb_000096_110--Hb_002316_020 Hb_000096_110--Hb_000007_440 Hb_000007_440--Hb_007483_080 Hb_002010_100 Hb_002010_100 Hb_000007_440--Hb_002010_100 Hb_000007_440--Hb_006483_090 Hb_001158_120 Hb_001158_120 Hb_000007_440--Hb_001158_120 Hb_000007_440--Hb_006970_170 Hb_026698_020 Hb_026698_020 Hb_001195_230--Hb_026698_020 Hb_002888_040 Hb_002888_040 Hb_001195_230--Hb_002888_040 Hb_001195_230--Hb_000007_440 Hb_001689_030 Hb_001689_030 Hb_001195_230--Hb_001689_030 Hb_000941_090 Hb_000941_090 Hb_002838_010--Hb_000941_090 Hb_000272_030 Hb_000272_030 Hb_002838_010--Hb_000272_030 Hb_001143_120 Hb_001143_120 Hb_002838_010--Hb_001143_120 Hb_001486_100 Hb_001486_100 Hb_002838_010--Hb_001486_100 Hb_000260_410 Hb_000260_410 Hb_002838_010--Hb_000260_410 Hb_000659_040 Hb_000659_040 Hb_002838_010--Hb_000659_040 Hb_002871_110 Hb_002871_110 Hb_006970_170--Hb_002871_110 Hb_000500_230 Hb_000500_230 Hb_006970_170--Hb_000500_230 Hb_007894_120 Hb_007894_120 Hb_006970_170--Hb_007894_120 Hb_000010_370 Hb_000010_370 Hb_006970_170--Hb_000010_370 Hb_030982_050 Hb_030982_050 Hb_006970_170--Hb_030982_050 Hb_003849_030 Hb_003849_030 Hb_006970_170--Hb_003849_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
164.347 1149.37 1412.85 1273.89 16.9907 19.323
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
47.773 4.07618 1.8824 614.219 1175.4

CAGE analysis