Hb_000096_110

Information

Type -
Description -
Location Contig96: 93462-95896
Sequence    

Annotation

kegg
ID fve:101291177
description uncharacterized protein LOC101291177
nr
ID XP_012469646.1
description PREDICTED: uncharacterized protein LOC105787685 isoform X1 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2QML8
description Gossypium raimondii chromosome 3, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_003G031100 PE=4 SV=1
Gene Ontology
ID GO:0005874
description duf4228 domain protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63690: 93364-93570 , PASA_asmbl_63691: 93606-95948
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000096_110 0.0 - - PREDICTED: uncharacterized protein LOC105787685 isoform X1 [Gossypium raimondii]
2 Hb_001195_230 0.0843667709 - - PREDICTED: 3-ketoacyl-CoA synthase 4 [Jatropha curcas]
3 Hb_000320_450 0.112914286 - - secretory peroxidase [Hevea brasiliensis]
4 Hb_002838_010 0.1139659656 - - AGPase large subunit protein [Hevea brasiliensis]
5 Hb_001179_010 0.1197934555 - - PREDICTED: glycosyltransferase family protein 64 protein C5 [Jatropha curcas]
6 Hb_002316_020 0.1240819829 - - PREDICTED: uncharacterized protein LOC105640407 [Jatropha curcas]
7 Hb_000007_440 0.1309392014 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
8 Hb_000230_360 0.1322466932 - - PREDICTED: BI1-like protein [Jatropha curcas]
9 Hb_001689_030 0.1333769294 - - PREDICTED: J domain-containing protein required for chloroplast accumulation response 1 [Jatropha curcas]
10 Hb_001353_020 0.1359927651 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005488_030 0.1375173204 - - F3F9.11 [Arabidopsis lyrata subsp. lyrata]
12 Hb_002849_180 0.1381880754 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
13 Hb_002888_040 0.138957573 - - hypothetical protein B456_009G267200 [Gossypium raimondii]
14 Hb_001486_100 0.1407837047 - - tubulin alpha chain, putative [Ricinus communis]
15 Hb_006970_170 0.1411294174 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
16 Hb_026698_020 0.1411794503 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
17 Hb_031385_010 0.141245786 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
18 Hb_001048_100 0.1422136246 - - PREDICTED: lysosomal Pro-X carboxypeptidase [Jatropha curcas]
19 Hb_029584_160 0.1422188349 - - PREDICTED: thioredoxin-like 2, chloroplastic [Populus euphratica]
20 Hb_007747_100 0.1448201908 - - PREDICTED: probable F-box protein At1g60180 [Jatropha curcas]

Gene co-expression network

sample Hb_000096_110 Hb_000096_110 Hb_001195_230 Hb_001195_230 Hb_000096_110--Hb_001195_230 Hb_000320_450 Hb_000320_450 Hb_000096_110--Hb_000320_450 Hb_002838_010 Hb_002838_010 Hb_000096_110--Hb_002838_010 Hb_001179_010 Hb_001179_010 Hb_000096_110--Hb_001179_010 Hb_002316_020 Hb_002316_020 Hb_000096_110--Hb_002316_020 Hb_000007_440 Hb_000007_440 Hb_000096_110--Hb_000007_440 Hb_026698_020 Hb_026698_020 Hb_001195_230--Hb_026698_020 Hb_002888_040 Hb_002888_040 Hb_001195_230--Hb_002888_040 Hb_001195_230--Hb_000007_440 Hb_001195_230--Hb_000320_450 Hb_001689_030 Hb_001689_030 Hb_001195_230--Hb_001689_030 Hb_002849_180 Hb_002849_180 Hb_000320_450--Hb_002849_180 Hb_000320_450--Hb_000007_440 Hb_000320_450--Hb_002838_010 Hb_006970_170 Hb_006970_170 Hb_000320_450--Hb_006970_170 Hb_000941_090 Hb_000941_090 Hb_002838_010--Hb_000941_090 Hb_000272_030 Hb_000272_030 Hb_002838_010--Hb_000272_030 Hb_001143_120 Hb_001143_120 Hb_002838_010--Hb_001143_120 Hb_001486_100 Hb_001486_100 Hb_002838_010--Hb_001486_100 Hb_000260_410 Hb_000260_410 Hb_002838_010--Hb_000260_410 Hb_000659_040 Hb_000659_040 Hb_002838_010--Hb_000659_040 Hb_001357_060 Hb_001357_060 Hb_001179_010--Hb_001357_060 Hb_000329_790 Hb_000329_790 Hb_001179_010--Hb_000329_790 Hb_001179_010--Hb_000007_440 Hb_007483_080 Hb_007483_080 Hb_001179_010--Hb_007483_080 Hb_001179_010--Hb_026698_020 Hb_010174_180 Hb_010174_180 Hb_002316_020--Hb_010174_180 Hb_031385_010 Hb_031385_010 Hb_002316_020--Hb_031385_010 Hb_001675_270 Hb_001675_270 Hb_002316_020--Hb_001675_270 Hb_003607_140 Hb_003607_140 Hb_002316_020--Hb_003607_140 Hb_000230_360 Hb_000230_360 Hb_002316_020--Hb_000230_360 Hb_001048_100 Hb_001048_100 Hb_002316_020--Hb_001048_100 Hb_000007_440--Hb_007483_080 Hb_000007_440--Hb_002849_180 Hb_002010_100 Hb_002010_100 Hb_000007_440--Hb_002010_100 Hb_006483_090 Hb_006483_090 Hb_000007_440--Hb_006483_090 Hb_001158_120 Hb_001158_120 Hb_000007_440--Hb_001158_120 Hb_000007_440--Hb_006970_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.794819 6.27102 7.14479 6.57225 0.199009 0.0545391
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0945242 0.0371734 0.686675 4.15041 7.17636

CAGE analysis