Hb_003007_030

Information

Type -
Description -
Location Contig3007: 11516-14464
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003007_030 0.0 - - -
2 Hb_001476_090 0.1083972195 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 3 [Jatropha curcas]
3 Hb_001689_030 0.1150286034 - - PREDICTED: J domain-containing protein required for chloroplast accumulation response 1 [Jatropha curcas]
4 Hb_083242_020 0.1206855263 - - hypothetical protein JCGZ_20097 [Jatropha curcas]
5 Hb_000418_150 0.1266611575 - - ABC transporter family protein [Hevea brasiliensis]
6 Hb_000816_160 0.1310253976 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
7 Hb_003177_090 0.13171941 - - PREDICTED: filament-like plant protein 4 [Jatropha curcas]
8 Hb_000365_220 0.1323022763 - - protein phosphatase-1, putative [Ricinus communis]
9 Hb_002344_080 0.1332884575 - - PREDICTED: protein YLS2-like [Populus euphratica]
10 Hb_002888_040 0.1360196955 - - hypothetical protein B456_009G267200 [Gossypium raimondii]
11 Hb_003517_100 0.140012869 transcription factor TF Family: GRAS -
12 Hb_003517_090 0.1427730291 - - PREDICTED: zinc finger CCCH domain-containing protein 18-like isoform X2 [Jatropha curcas]
13 Hb_027337_030 0.1441490368 - - PREDICTED: uncharacterized protein LOC104602841 [Nelumbo nucifera]
14 Hb_000594_130 0.1470367124 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_031862_200 0.1473614229 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]
16 Hb_025045_010 0.1484814621 - - catalytic, putative [Ricinus communis]
17 Hb_001836_010 0.15149698 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 [Jatropha curcas]
18 Hb_004605_020 0.1515112264 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [Jatropha curcas]
19 Hb_004785_200 0.1533957734 - - PREDICTED: protein MKS1 [Jatropha curcas]
20 Hb_000103_410 0.1550540906 - - PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Jatropha curcas]

Gene co-expression network

sample Hb_003007_030 Hb_003007_030 Hb_001476_090 Hb_001476_090 Hb_003007_030--Hb_001476_090 Hb_001689_030 Hb_001689_030 Hb_003007_030--Hb_001689_030 Hb_083242_020 Hb_083242_020 Hb_003007_030--Hb_083242_020 Hb_000418_150 Hb_000418_150 Hb_003007_030--Hb_000418_150 Hb_000816_160 Hb_000816_160 Hb_003007_030--Hb_000816_160 Hb_003177_090 Hb_003177_090 Hb_003007_030--Hb_003177_090 Hb_001496_120 Hb_001496_120 Hb_001476_090--Hb_001496_120 Hb_000365_220 Hb_000365_220 Hb_001476_090--Hb_000365_220 Hb_001476_090--Hb_000418_150 Hb_005542_010 Hb_005542_010 Hb_001476_090--Hb_005542_010 Hb_002888_060 Hb_002888_060 Hb_001476_090--Hb_002888_060 Hb_002344_080 Hb_002344_080 Hb_001689_030--Hb_002344_080 Hb_001689_030--Hb_003177_090 Hb_000103_410 Hb_000103_410 Hb_001689_030--Hb_000103_410 Hb_002888_040 Hb_002888_040 Hb_001689_030--Hb_002888_040 Hb_001689_030--Hb_000816_160 Hb_027337_030 Hb_027337_030 Hb_083242_020--Hb_027337_030 Hb_003517_090 Hb_003517_090 Hb_083242_020--Hb_003517_090 Hb_083242_020--Hb_000418_150 Hb_004605_020 Hb_004605_020 Hb_083242_020--Hb_004605_020 Hb_000757_020 Hb_000757_020 Hb_083242_020--Hb_000757_020 Hb_000438_020 Hb_000438_020 Hb_000418_150--Hb_000438_020 Hb_000418_150--Hb_000757_020 Hb_004864_020 Hb_004864_020 Hb_000418_150--Hb_004864_020 Hb_000418_150--Hb_003177_090 Hb_000418_150--Hb_001496_120 Hb_002099_060 Hb_002099_060 Hb_000418_150--Hb_002099_060 Hb_000816_160--Hb_002344_080 Hb_000363_050 Hb_000363_050 Hb_000816_160--Hb_000363_050 Hb_003077_140 Hb_003077_140 Hb_000816_160--Hb_003077_140 Hb_000816_160--Hb_004605_020 Hb_006040_170 Hb_006040_170 Hb_003177_090--Hb_006040_170 Hb_003177_090--Hb_002344_080 Hb_003177_090--Hb_000757_020 Hb_143629_200 Hb_143629_200 Hb_003177_090--Hb_143629_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.197333 2.56508 1.78642 1.26187 0.163411 0.193765
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.079358 0 1.69231 3.68584

CAGE analysis