Hb_027337_030

Information

Type -
Description -
Location Contig27337: 27096-31051
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa015437mg
description hypothetical protein
nr
ID XP_010264998.1
description PREDICTED: uncharacterized protein LOC104602841 [Nelumbo nucifera]
swissprot
ID -
description -
trembl
ID A0A087HNU1
description Uncharacterized protein OS=Arabis alpina GN=AALP_AA1G173500 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027337_030 0.0 - - PREDICTED: uncharacterized protein LOC104602841 [Nelumbo nucifera]
2 Hb_083242_020 0.1005135634 - - hypothetical protein JCGZ_20097 [Jatropha curcas]
3 Hb_004605_020 0.1150734299 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [Jatropha curcas]
4 Hb_061908_020 0.1220288645 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
5 Hb_004007_230 0.1402000957 - - PREDICTED: putative formamidase C869.04 isoform X1 [Jatropha curcas]
6 Hb_004032_330 0.1411305117 - - PREDICTED: calvin cycle protein CP12-3, chloroplastic [Jatropha curcas]
7 Hb_002110_110 0.1412057219 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
8 Hb_003517_090 0.1415150033 - - PREDICTED: zinc finger CCCH domain-containing protein 18-like isoform X2 [Jatropha curcas]
9 Hb_003077_140 0.1432438222 - - hypothetical protein JCGZ_16294 [Jatropha curcas]
10 Hb_003007_030 0.1441490368 - - -
11 Hb_001357_360 0.1443458728 - - zinc finger protein, putative [Ricinus communis]
12 Hb_000418_150 0.1452531662 - - ABC transporter family protein [Hevea brasiliensis]
13 Hb_000816_160 0.1469631642 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
14 Hb_000767_010 0.155660834 - - PREDICTED: geraniol 8-hydroxylase-like isoform X2 [Solanum lycopersicum]
15 Hb_000522_010 0.1579252459 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Jatropha curcas]
16 Hb_005016_100 0.1593754728 - - -
17 Hb_000261_320 0.1611440957 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
18 Hb_000363_050 0.1625581597 - - PREDICTED: zinc finger CCCH domain-containing protein 18-like isoform X2 [Jatropha curcas]
19 Hb_001971_020 0.1629406704 - - PREDICTED: alpha-dioxygenase 2 [Populus euphratica]
20 Hb_062229_010 0.1644416451 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]

Gene co-expression network

sample Hb_027337_030 Hb_027337_030 Hb_083242_020 Hb_083242_020 Hb_027337_030--Hb_083242_020 Hb_004605_020 Hb_004605_020 Hb_027337_030--Hb_004605_020 Hb_061908_020 Hb_061908_020 Hb_027337_030--Hb_061908_020 Hb_004007_230 Hb_004007_230 Hb_027337_030--Hb_004007_230 Hb_004032_330 Hb_004032_330 Hb_027337_030--Hb_004032_330 Hb_002110_110 Hb_002110_110 Hb_027337_030--Hb_002110_110 Hb_003007_030 Hb_003007_030 Hb_083242_020--Hb_003007_030 Hb_003517_090 Hb_003517_090 Hb_083242_020--Hb_003517_090 Hb_000418_150 Hb_000418_150 Hb_083242_020--Hb_000418_150 Hb_083242_020--Hb_004605_020 Hb_000757_020 Hb_000757_020 Hb_083242_020--Hb_000757_020 Hb_004605_020--Hb_061908_020 Hb_002217_070 Hb_002217_070 Hb_004605_020--Hb_002217_070 Hb_006618_020 Hb_006618_020 Hb_004605_020--Hb_006618_020 Hb_002609_130 Hb_002609_130 Hb_004605_020--Hb_002609_130 Hb_062229_010 Hb_062229_010 Hb_004605_020--Hb_062229_010 Hb_061908_020--Hb_062229_010 Hb_001391_100 Hb_001391_100 Hb_061908_020--Hb_001391_100 Hb_172676_010 Hb_172676_010 Hb_061908_020--Hb_172676_010 Hb_061908_020--Hb_006618_020 Hb_026053_030 Hb_026053_030 Hb_004007_230--Hb_026053_030 Hb_001357_360 Hb_001357_360 Hb_004007_230--Hb_001357_360 Hb_004143_140 Hb_004143_140 Hb_004007_230--Hb_004143_140 Hb_000044_050 Hb_000044_050 Hb_004007_230--Hb_000044_050 Hb_003077_140 Hb_003077_140 Hb_004007_230--Hb_003077_140 Hb_000767_010 Hb_000767_010 Hb_004007_230--Hb_000767_010 Hb_005016_100 Hb_005016_100 Hb_004032_330--Hb_005016_100 Hb_000770_010 Hb_000770_010 Hb_004032_330--Hb_000770_010 Hb_021409_120 Hb_021409_120 Hb_004032_330--Hb_021409_120 Hb_004604_030 Hb_004604_030 Hb_004032_330--Hb_004604_030 Hb_004032_330--Hb_003077_140 Hb_000032_020 Hb_000032_020 Hb_002110_110--Hb_000032_020 Hb_005542_010 Hb_005542_010 Hb_002110_110--Hb_005542_010 Hb_000879_030 Hb_000879_030 Hb_002110_110--Hb_000879_030 Hb_001405_230 Hb_001405_230 Hb_002110_110--Hb_001405_230 Hb_010565_030 Hb_010565_030 Hb_002110_110--Hb_010565_030 Hb_011472_050 Hb_011472_050 Hb_002110_110--Hb_011472_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0340673 1.47928 0.51023 0.479934 0.0294832 0.128355
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0518128 0 0 0.733851 1.44507

CAGE analysis