Hb_000879_030

Information

Type -
Description -
Location Contig879: 39909-59477
Sequence    

Annotation

kegg
ID pda:103707552
description uncharacterized LOC103707552
nr
ID XP_008790306.1
description PREDICTED: uncharacterized protein LOC103707552 [Phoenix dactylifera]
swissprot
ID Q38931
description Peptidyl-prolyl cis-trans isomerase FKBP62 OS=Arabidopsis thaliana GN=FKBP62 PE=1 SV=2
trembl
ID B9R6Y2
description Peptidylprolyl isomerase, putative OS=Ricinus communis GN=RCOM_1586770 PE=4 SV=1
Gene Ontology
ID GO:0003755
description serine carboxypeptidase-like 17

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61333: 40604-42530 , PASA_asmbl_61334: 41445-41609 , PASA_asmbl_61335: 41899-42257 , PASA_asmbl_61336: 43240-43774 , PASA_asmbl_61337: 43942-45053 , PASA_asmbl_61338: 45066-45695 , PASA_asmbl_61339: 47617-54992 , PASA_asmbl_61340: 56528-56812 , PASA_asmbl_61341: 57165-59092 , PASA_asmbl_61342: 59196-59346
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000879_030 0.0 - - PREDICTED: uncharacterized protein LOC103707552 [Phoenix dactylifera]
2 Hb_000032_020 0.0838166936 - - Centromeric protein E, putative [Ricinus communis]
3 Hb_002110_110 0.122329076 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
4 Hb_005542_010 0.1480587712 - - Uncharacterized protein TCM_021447 [Theobroma cacao]
5 Hb_004319_060 0.1497924649 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
6 Hb_000406_190 0.1502916134 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
7 Hb_000221_180 0.1531884385 - - VQ motif-containing family protein [Populus trichocarpa]
8 Hb_073973_020 0.1536406386 - - PREDICTED: DIS3-like exonuclease 2 [Jatropha curcas]
9 Hb_014006_010 0.1607953067 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
10 Hb_000175_270 0.161319445 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
11 Hb_000365_220 0.1660127635 - - protein phosphatase-1, putative [Ricinus communis]
12 Hb_000417_410 0.1667471543 - - PREDICTED: protein STICHEL-like 3 isoform X2 [Jatropha curcas]
13 Hb_005695_080 0.1733345328 - - PREDICTED: acetyl-CoA carboxylase 1-like [Jatropha curcas]
14 Hb_001840_110 0.173793566 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
15 Hb_002888_060 0.1750504495 - - PREDICTED: phospholipase SGR2 isoform X1 [Jatropha curcas]
16 Hb_001496_120 0.1768238365 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
17 Hb_010921_020 0.1778147185 - - PREDICTED: cyclin-SDS [Jatropha curcas]
18 Hb_001307_200 0.1844318265 - - PREDICTED: uncharacterized protein LOC105644489 [Jatropha curcas]
19 Hb_001476_090 0.184641199 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 3 [Jatropha curcas]
20 Hb_002217_070 0.1852442019 - - PREDICTED: uncharacterized protein LOC105643596 [Jatropha curcas]

Gene co-expression network

sample Hb_000879_030 Hb_000879_030 Hb_000032_020 Hb_000032_020 Hb_000879_030--Hb_000032_020 Hb_002110_110 Hb_002110_110 Hb_000879_030--Hb_002110_110 Hb_005542_010 Hb_005542_010 Hb_000879_030--Hb_005542_010 Hb_004319_060 Hb_004319_060 Hb_000879_030--Hb_004319_060 Hb_000406_190 Hb_000406_190 Hb_000879_030--Hb_000406_190 Hb_000221_180 Hb_000221_180 Hb_000879_030--Hb_000221_180 Hb_000032_020--Hb_002110_110 Hb_000032_020--Hb_000221_180 Hb_073973_020 Hb_073973_020 Hb_000032_020--Hb_073973_020 Hb_000175_270 Hb_000175_270 Hb_000032_020--Hb_000175_270 Hb_000032_020--Hb_005542_010 Hb_002110_110--Hb_005542_010 Hb_001405_230 Hb_001405_230 Hb_002110_110--Hb_001405_230 Hb_010565_030 Hb_010565_030 Hb_002110_110--Hb_010565_030 Hb_011472_050 Hb_011472_050 Hb_002110_110--Hb_011472_050 Hb_005542_010--Hb_010565_030 Hb_005542_010--Hb_011472_050 Hb_011609_210 Hb_011609_210 Hb_005542_010--Hb_011609_210 Hb_000173_110 Hb_000173_110 Hb_005542_010--Hb_000173_110 Hb_009434_060 Hb_009434_060 Hb_005542_010--Hb_009434_060 Hb_004319_060--Hb_000032_020 Hb_004319_060--Hb_011609_210 Hb_004319_060--Hb_002110_110 Hb_004319_060--Hb_000221_180 Hb_004319_060--Hb_005542_010 Hb_005695_080 Hb_005695_080 Hb_000406_190--Hb_005695_080 Hb_001080_030 Hb_001080_030 Hb_000406_190--Hb_001080_030 Hb_014006_010 Hb_014006_010 Hb_000406_190--Hb_014006_010 Hb_000406_190--Hb_000032_020 Hb_001865_010 Hb_001865_010 Hb_000406_190--Hb_001865_010 Hb_000731_290 Hb_000731_290 Hb_000406_190--Hb_000731_290 Hb_000221_180--Hb_014006_010 Hb_000221_180--Hb_073973_020 Hb_000221_180--Hb_000175_270 Hb_001496_120 Hb_001496_120 Hb_000221_180--Hb_001496_120 Hb_001307_200 Hb_001307_200 Hb_000221_180--Hb_001307_200 Hb_013399_090 Hb_013399_090 Hb_000221_180--Hb_013399_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.08546 21.0363 10.1611 2.94659 2.18412 1.45792
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.60252 1.57822 1.83054 15.0668 23.773

CAGE analysis