Hb_004319_060

Information

Type -
Description -
Location Contig4319: 47586-51614
Sequence    

Annotation

kegg
ID rcu:RCOM_0824170
description hypothetical protein
nr
ID XP_009613217.1
description PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID B9SIM6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0824170 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42286: 45883-46802 , PASA_asmbl_42288: 49460-50657
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004319_060 0.0 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
2 Hb_000879_030 0.1497924649 - - PREDICTED: uncharacterized protein LOC103707552 [Phoenix dactylifera]
3 Hb_000032_020 0.158894789 - - Centromeric protein E, putative [Ricinus communis]
4 Hb_011609_210 0.1608356234 - - Uncharacterized protein TCM_011393 [Theobroma cacao]
5 Hb_002110_110 0.1657284484 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
6 Hb_000221_180 0.1671453709 - - VQ motif-containing family protein [Populus trichocarpa]
7 Hb_005542_010 0.169023066 - - Uncharacterized protein TCM_021447 [Theobroma cacao]
8 Hb_005695_080 0.1691093648 - - PREDICTED: acetyl-CoA carboxylase 1-like [Jatropha curcas]
9 Hb_012404_080 0.1736819094 - - PREDICTED: ABC transporter G family member 34-like [Jatropha curcas]
10 Hb_002888_060 0.175602679 - - PREDICTED: phospholipase SGR2 isoform X1 [Jatropha curcas]
11 Hb_002217_070 0.1827871289 - - PREDICTED: uncharacterized protein LOC105643596 [Jatropha curcas]
12 Hb_000406_190 0.1830700272 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
13 Hb_011853_010 0.1836629917 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
14 Hb_000141_010 0.1856401995 - - PREDICTED: uncharacterized protein LOC105632253 [Jatropha curcas]
15 Hb_014006_010 0.1881600305 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
16 Hb_010565_030 0.1893486361 - - hypothetical protein VITISV_006810 [Vitis vinifera]
17 Hb_001080_030 0.1899669617 - - AMP dependent ligase, putative [Ricinus communis]
18 Hb_009296_050 0.1909091474 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
19 Hb_000731_290 0.1985085999 - - ABC transporter family protein [Hevea brasiliensis]
20 Hb_073973_020 0.1988792443 - - PREDICTED: DIS3-like exonuclease 2 [Jatropha curcas]

Gene co-expression network

sample Hb_004319_060 Hb_004319_060 Hb_000879_030 Hb_000879_030 Hb_004319_060--Hb_000879_030 Hb_000032_020 Hb_000032_020 Hb_004319_060--Hb_000032_020 Hb_011609_210 Hb_011609_210 Hb_004319_060--Hb_011609_210 Hb_002110_110 Hb_002110_110 Hb_004319_060--Hb_002110_110 Hb_000221_180 Hb_000221_180 Hb_004319_060--Hb_000221_180 Hb_005542_010 Hb_005542_010 Hb_004319_060--Hb_005542_010 Hb_000879_030--Hb_000032_020 Hb_000879_030--Hb_002110_110 Hb_000879_030--Hb_005542_010 Hb_000406_190 Hb_000406_190 Hb_000879_030--Hb_000406_190 Hb_000879_030--Hb_000221_180 Hb_000032_020--Hb_002110_110 Hb_000032_020--Hb_000221_180 Hb_073973_020 Hb_073973_020 Hb_000032_020--Hb_073973_020 Hb_000175_270 Hb_000175_270 Hb_000032_020--Hb_000175_270 Hb_000032_020--Hb_005542_010 Hb_010565_030 Hb_010565_030 Hb_011609_210--Hb_010565_030 Hb_012404_080 Hb_012404_080 Hb_011609_210--Hb_012404_080 Hb_011609_210--Hb_005542_010 Hb_000977_150 Hb_000977_150 Hb_011609_210--Hb_000977_150 Hb_000454_160 Hb_000454_160 Hb_011609_210--Hb_000454_160 Hb_018272_050 Hb_018272_050 Hb_011609_210--Hb_018272_050 Hb_002110_110--Hb_005542_010 Hb_001405_230 Hb_001405_230 Hb_002110_110--Hb_001405_230 Hb_002110_110--Hb_010565_030 Hb_011472_050 Hb_011472_050 Hb_002110_110--Hb_011472_050 Hb_014006_010 Hb_014006_010 Hb_000221_180--Hb_014006_010 Hb_000221_180--Hb_073973_020 Hb_000221_180--Hb_000175_270 Hb_001496_120 Hb_001496_120 Hb_000221_180--Hb_001496_120 Hb_001307_200 Hb_001307_200 Hb_000221_180--Hb_001307_200 Hb_013399_090 Hb_013399_090 Hb_000221_180--Hb_013399_090 Hb_005542_010--Hb_010565_030 Hb_005542_010--Hb_011472_050 Hb_000173_110 Hb_000173_110 Hb_005542_010--Hb_000173_110 Hb_009434_060 Hb_009434_060 Hb_005542_010--Hb_009434_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.812777 0.274609 0.245813 0.0861455 0.133229
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0293376 0.115407 0.130359 0.681281 1.20985

CAGE analysis