Hb_018272_050

Information

Type -
Description -
Location Contig18272: 35954-46786
Sequence    

Annotation

kegg
ID tcc:TCM_036284
description Cysteine-rich RLK (RECEPTOR-like protein kinase) 8
nr
ID CAN71812.1
description hypothetical protein VITISV_037409 [Vitis vinifera]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A5AYD3
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037409 PE=4 SV=1
Gene Ontology
ID GO:0005488
description cysteine-rich rlk (receptor-like protein kinase) 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17797: 16199-39495 , PASA_asmbl_17799: 40887-41233
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018272_050 0.0 - - hypothetical protein VITISV_037409 [Vitis vinifera]
2 Hb_011609_210 0.145155467 - - Uncharacterized protein TCM_011393 [Theobroma cacao]
3 Hb_000454_160 0.1466753738 - - amidophosphoribosyltransferase, putative [Ricinus communis]
4 Hb_000237_160 0.1693607509 - - BEL1-like homeodomain protein 1 [Morus notabilis]
5 Hb_012404_080 0.1742114895 - - PREDICTED: ABC transporter G family member 34-like [Jatropha curcas]
6 Hb_046117_030 0.1745795471 - - sialyltransferase, putative [Ricinus communis]
7 Hb_003799_060 0.1802036601 - - hypothetical protein POPTR_0005s22800g [Populus trichocarpa]
8 Hb_092029_010 0.18359998 - - Disease resistance protein RPM1, putative [Ricinus communis]
9 Hb_000959_010 0.1852582444 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
10 Hb_006483_120 0.1875880903 - - DNA binding protein, putative [Ricinus communis]
11 Hb_001793_030 0.1900284324 - - Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Theobroma cacao]
12 Hb_004007_200 0.1902081436 - - PREDICTED: BTB/POZ domain-containing protein NPY5 [Jatropha curcas]
13 Hb_002983_090 0.1907187481 - - Altered inheritance of mitochondria protein 32 [Glycine soja]
14 Hb_000977_150 0.1952242238 - - latex cyanogenic beta glucosidase [Hevea brasiliensis]
15 Hb_005183_040 0.1954060542 desease resistance Gene Name: NB-ARC Disease resistance protein RPM1, putative [Ricinus communis]
16 Hb_041813_040 0.1961968339 - - NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5, truncated - sugar beet mitochondrion (mitochondrion) [Beta vulgaris subsp. vulgaris]
17 Hb_003517_090 0.1969828201 - - PREDICTED: zinc finger CCCH domain-containing protein 18-like isoform X2 [Jatropha curcas]
18 Hb_049293_010 0.1980369123 - - kinase, putative [Ricinus communis]
19 Hb_094437_020 0.2006822293 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
20 Hb_010565_030 0.2010456768 - - hypothetical protein VITISV_006810 [Vitis vinifera]

Gene co-expression network

sample Hb_018272_050 Hb_018272_050 Hb_011609_210 Hb_011609_210 Hb_018272_050--Hb_011609_210 Hb_000454_160 Hb_000454_160 Hb_018272_050--Hb_000454_160 Hb_000237_160 Hb_000237_160 Hb_018272_050--Hb_000237_160 Hb_012404_080 Hb_012404_080 Hb_018272_050--Hb_012404_080 Hb_046117_030 Hb_046117_030 Hb_018272_050--Hb_046117_030 Hb_003799_060 Hb_003799_060 Hb_018272_050--Hb_003799_060 Hb_010565_030 Hb_010565_030 Hb_011609_210--Hb_010565_030 Hb_011609_210--Hb_012404_080 Hb_005542_010 Hb_005542_010 Hb_011609_210--Hb_005542_010 Hb_000977_150 Hb_000977_150 Hb_011609_210--Hb_000977_150 Hb_011609_210--Hb_000454_160 Hb_000454_160--Hb_012404_080 Hb_000454_160--Hb_000977_150 Hb_002518_180 Hb_002518_180 Hb_000454_160--Hb_002518_180 Hb_000414_180 Hb_000414_180 Hb_000454_160--Hb_000414_180 Hb_000753_150 Hb_000753_150 Hb_000237_160--Hb_000753_150 Hb_003517_090 Hb_003517_090 Hb_000237_160--Hb_003517_090 Hb_002983_090 Hb_002983_090 Hb_000237_160--Hb_002983_090 Hb_003177_090 Hb_003177_090 Hb_000237_160--Hb_003177_090 Hb_000237_170 Hb_000237_170 Hb_000237_160--Hb_000237_170 Hb_000959_010 Hb_000959_010 Hb_000237_160--Hb_000959_010 Hb_001080_030 Hb_001080_030 Hb_012404_080--Hb_001080_030 Hb_012404_080--Hb_000977_150 Hb_000731_290 Hb_000731_290 Hb_012404_080--Hb_000731_290 Hb_005695_080 Hb_005695_080 Hb_012404_080--Hb_005695_080 Hb_000033_010 Hb_000033_010 Hb_046117_030--Hb_000033_010 Hb_000130_480 Hb_000130_480 Hb_046117_030--Hb_000130_480 Hb_046117_030--Hb_002983_090 Hb_046117_030--Hb_000237_160 Hb_094437_020 Hb_094437_020 Hb_046117_030--Hb_094437_020 Hb_000594_130 Hb_000594_130 Hb_046117_030--Hb_000594_130 Hb_003858_060 Hb_003858_060 Hb_003799_060--Hb_003858_060 Hb_092029_010 Hb_092029_010 Hb_003799_060--Hb_092029_010 Hb_003799_060--Hb_002983_090 Hb_002876_280 Hb_002876_280 Hb_003799_060--Hb_002876_280 Hb_028872_100 Hb_028872_100 Hb_003799_060--Hb_028872_100 Hb_003799_060--Hb_000237_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0284469 0.148446 0.049797 0.163656 0 0.00772457
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0292271 0.0278317 0.127712 0.465445

CAGE analysis