Hb_012404_080

Information

Type -
Description -
Location Contig12404: 112052-121108
Sequence    

Annotation

kegg
ID rcu:RCOM_0023060
description ATP-binding cassette transporter, putative (EC:3.6.3.28)
nr
ID XP_012066453.1
description PREDICTED: ABC transporter G family member 34-like [Jatropha curcas]
swissprot
ID Q7PC84
description ABC transporter G family member 39 OS=Arabidopsis thaliana GN=ABCG39 PE=3 SV=1
trembl
ID B9T794
description ATP-binding cassette transporter, putative OS=Ricinus communis GN=RCOM_0023060 PE=4 SV=1
Gene Ontology
ID GO:0016020
description pleiotropic drug resistance protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07315: 112197-113216 , PASA_asmbl_07316: 113604-116133 , PASA_asmbl_07317: 116364-117468 , PASA_asmbl_07318: 117535-117741 , PASA_asmbl_07320: 118196-119244
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012404_080 0.0 - - PREDICTED: ABC transporter G family member 34-like [Jatropha curcas]
2 Hb_011609_210 0.1141729016 - - Uncharacterized protein TCM_011393 [Theobroma cacao]
3 Hb_000454_160 0.133531999 - - amidophosphoribosyltransferase, putative [Ricinus communis]
4 Hb_001080_030 0.1395101567 - - AMP dependent ligase, putative [Ricinus communis]
5 Hb_000977_150 0.1494400633 - - latex cyanogenic beta glucosidase [Hevea brasiliensis]
6 Hb_000731_290 0.1571897281 - - ABC transporter family protein [Hevea brasiliensis]
7 Hb_005695_080 0.1574286518 - - PREDICTED: acetyl-CoA carboxylase 1-like [Jatropha curcas]
8 Hb_008511_140 0.1575530741 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632314 [Jatropha curcas]
9 Hb_052946_010 0.1583549506 - - PREDICTED: uncharacterized protein LOC105639103 [Jatropha curcas]
10 Hb_004319_060 0.1736819094 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
11 Hb_000404_040 0.1740869246 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002811_190 0.1741311352 - - tRNA pseudouridine synthase d, putative [Ricinus communis]
13 Hb_018272_050 0.1742114895 - - hypothetical protein VITISV_037409 [Vitis vinifera]
14 Hb_173808_010 0.1761907596 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
15 Hb_000406_190 0.1775643089 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
16 Hb_006700_040 0.1816931373 - - PREDICTED: vacuolar-sorting receptor 6-like [Jatropha curcas]
17 Hb_004041_030 0.1843403661 - - PREDICTED: mitochondrial substrate carrier family protein C-like isoform X1 [Populus euphratica]
18 Hb_003226_190 0.1882622547 - - PREDICTED: blue-light photoreceptor PHR2 [Jatropha curcas]
19 Hb_011853_010 0.188302652 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
20 Hb_000167_120 0.1883334309 - - PREDICTED: U-box domain-containing protein 14 [Jatropha curcas]

Gene co-expression network

sample Hb_012404_080 Hb_012404_080 Hb_011609_210 Hb_011609_210 Hb_012404_080--Hb_011609_210 Hb_000454_160 Hb_000454_160 Hb_012404_080--Hb_000454_160 Hb_001080_030 Hb_001080_030 Hb_012404_080--Hb_001080_030 Hb_000977_150 Hb_000977_150 Hb_012404_080--Hb_000977_150 Hb_000731_290 Hb_000731_290 Hb_012404_080--Hb_000731_290 Hb_005695_080 Hb_005695_080 Hb_012404_080--Hb_005695_080 Hb_010565_030 Hb_010565_030 Hb_011609_210--Hb_010565_030 Hb_005542_010 Hb_005542_010 Hb_011609_210--Hb_005542_010 Hb_011609_210--Hb_000977_150 Hb_011609_210--Hb_000454_160 Hb_018272_050 Hb_018272_050 Hb_011609_210--Hb_018272_050 Hb_000454_160--Hb_018272_050 Hb_000454_160--Hb_000977_150 Hb_002518_180 Hb_002518_180 Hb_000454_160--Hb_002518_180 Hb_000414_180 Hb_000414_180 Hb_000454_160--Hb_000414_180 Hb_052946_010 Hb_052946_010 Hb_001080_030--Hb_052946_010 Hb_001080_030--Hb_000731_290 Hb_001080_030--Hb_005695_080 Hb_159809_090 Hb_159809_090 Hb_001080_030--Hb_159809_090 Hb_008511_140 Hb_008511_140 Hb_001080_030--Hb_008511_140 Hb_003226_190 Hb_003226_190 Hb_001080_030--Hb_003226_190 Hb_000032_600 Hb_000032_600 Hb_000977_150--Hb_000032_600 Hb_001054_060 Hb_001054_060 Hb_000977_150--Hb_001054_060 Hb_002811_190 Hb_002811_190 Hb_000977_150--Hb_002811_190 Hb_067664_010 Hb_067664_010 Hb_000977_150--Hb_067664_010 Hb_000329_080 Hb_000329_080 Hb_000977_150--Hb_000329_080 Hb_001195_370 Hb_001195_370 Hb_000977_150--Hb_001195_370 Hb_000731_290--Hb_052946_010 Hb_000025_500 Hb_000025_500 Hb_000731_290--Hb_000025_500 Hb_001341_010 Hb_001341_010 Hb_000731_290--Hb_001341_010 Hb_000167_120 Hb_000167_120 Hb_000731_290--Hb_000167_120 Hb_003549_050 Hb_003549_050 Hb_000731_290--Hb_003549_050 Hb_001865_010 Hb_001865_010 Hb_005695_080--Hb_001865_010 Hb_000406_190 Hb_000406_190 Hb_005695_080--Hb_000406_190 Hb_001425_010 Hb_001425_010 Hb_005695_080--Hb_001425_010 Hb_001969_130 Hb_001969_130 Hb_005695_080--Hb_001969_130 Hb_005695_080--Hb_052946_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.815165 7.45793 2.55747 5.0188 0.428814 0.880873
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.801595 2.32454 3.40563 8.09775 19.814

CAGE analysis