Hb_000454_160

Information

Type -
Description -
Location Contig454: 169339-171072
Sequence    

Annotation

kegg
ID rcu:RCOM_1451410
description amidophosphoribosyltransferase, putative (EC:2.4.2.14)
nr
ID XP_002513012.1
description amidophosphoribosyltransferase, putative [Ricinus communis]
swissprot
ID Q9STG9
description Amidophosphoribosyltransferase 2, chloroplastic OS=Arabidopsis thaliana GN=ASE2 PE=1 SV=1
trembl
ID B9RG60
description Amidophosphoribosyltransferase, putative OS=Ricinus communis GN=RCOM_1451410 PE=3 SV=1
Gene Ontology
ID GO:0004044
description gln phosphoribosyl pyrophosphate amidotransferase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43354: 169162-169686
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000454_160 0.0 - - amidophosphoribosyltransferase, putative [Ricinus communis]
2 Hb_012404_080 0.133531999 - - PREDICTED: ABC transporter G family member 34-like [Jatropha curcas]
3 Hb_011609_210 0.1351383039 - - Uncharacterized protein TCM_011393 [Theobroma cacao]
4 Hb_018272_050 0.1466753738 - - hypothetical protein VITISV_037409 [Vitis vinifera]
5 Hb_000977_150 0.157969162 - - latex cyanogenic beta glucosidase [Hevea brasiliensis]
6 Hb_002518_180 0.162571109 - - hypothetical protein POPTR_0001s25460g [Populus trichocarpa]
7 Hb_000414_180 0.165018837 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X2 [Vitis vinifera]
8 Hb_004007_200 0.1746492957 - - PREDICTED: BTB/POZ domain-containing protein NPY5 [Jatropha curcas]
9 Hb_000313_230 0.1767804303 - - PREDICTED: uncharacterized protein LOC105636893 [Jatropha curcas]
10 Hb_001054_060 0.17697812 - - PREDICTED: dihydropyrimidine dehydrogenase [NADP(+)] [Jatropha curcas]
11 Hb_092029_010 0.1781560882 - - Disease resistance protein RPM1, putative [Ricinus communis]
12 Hb_000329_080 0.179026733 - - PREDICTED: transketolase, chloroplastic [Jatropha curcas]
13 Hb_046117_030 0.1817220364 - - sialyltransferase, putative [Ricinus communis]
14 Hb_000442_170 0.1852982406 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
15 Hb_001195_370 0.1859231888 - - -
16 Hb_006594_080 0.1863195686 - - beta-glucosidase, putative [Ricinus communis]
17 Hb_062013_010 0.1866540761 - - phosphoprotein phosphatase, putative [Ricinus communis]
18 Hb_003778_020 0.1886771397 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
19 Hb_030312_030 0.1938163692 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40 isoform X1 [Jatropha curcas]
20 Hb_001677_230 0.1948553172 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000454_160 Hb_000454_160 Hb_012404_080 Hb_012404_080 Hb_000454_160--Hb_012404_080 Hb_011609_210 Hb_011609_210 Hb_000454_160--Hb_011609_210 Hb_018272_050 Hb_018272_050 Hb_000454_160--Hb_018272_050 Hb_000977_150 Hb_000977_150 Hb_000454_160--Hb_000977_150 Hb_002518_180 Hb_002518_180 Hb_000454_160--Hb_002518_180 Hb_000414_180 Hb_000414_180 Hb_000454_160--Hb_000414_180 Hb_012404_080--Hb_011609_210 Hb_001080_030 Hb_001080_030 Hb_012404_080--Hb_001080_030 Hb_012404_080--Hb_000977_150 Hb_000731_290 Hb_000731_290 Hb_012404_080--Hb_000731_290 Hb_005695_080 Hb_005695_080 Hb_012404_080--Hb_005695_080 Hb_010565_030 Hb_010565_030 Hb_011609_210--Hb_010565_030 Hb_005542_010 Hb_005542_010 Hb_011609_210--Hb_005542_010 Hb_011609_210--Hb_000977_150 Hb_011609_210--Hb_018272_050 Hb_000237_160 Hb_000237_160 Hb_018272_050--Hb_000237_160 Hb_018272_050--Hb_012404_080 Hb_046117_030 Hb_046117_030 Hb_018272_050--Hb_046117_030 Hb_003799_060 Hb_003799_060 Hb_018272_050--Hb_003799_060 Hb_000032_600 Hb_000032_600 Hb_000977_150--Hb_000032_600 Hb_001054_060 Hb_001054_060 Hb_000977_150--Hb_001054_060 Hb_002811_190 Hb_002811_190 Hb_000977_150--Hb_002811_190 Hb_067664_010 Hb_067664_010 Hb_000977_150--Hb_067664_010 Hb_000329_080 Hb_000329_080 Hb_000977_150--Hb_000329_080 Hb_001195_370 Hb_001195_370 Hb_000977_150--Hb_001195_370 Hb_033594_100 Hb_033594_100 Hb_002518_180--Hb_033594_100 Hb_009535_030 Hb_009535_030 Hb_002518_180--Hb_009535_030 Hb_004007_200 Hb_004007_200 Hb_002518_180--Hb_004007_200 Hb_187959_010 Hb_187959_010 Hb_002518_180--Hb_187959_010 Hb_000970_020 Hb_000970_020 Hb_002518_180--Hb_000970_020 Hb_098533_010 Hb_098533_010 Hb_002518_180--Hb_098533_010 Hb_062013_010 Hb_062013_010 Hb_000414_180--Hb_062013_010 Hb_005288_060 Hb_005288_060 Hb_000414_180--Hb_005288_060 Hb_001793_030 Hb_001793_030 Hb_000414_180--Hb_001793_030 Hb_000414_180--Hb_000329_080 Hb_001080_150 Hb_001080_150 Hb_000414_180--Hb_001080_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.353531 5.04795 1.82625 6.54278 0.054477 0.658022
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.370641 0.499909 2.39937 7.56062 17.2209

CAGE analysis