Hb_033594_100

Information

Type transcription factor
Description TF Family: GNAT
Location Contig33594: 75337-87548
Sequence    

Annotation

kegg
ID pop:POPTR_0007s14900g
description POPTRDRAFT_869897; hypothetical protein
nr
ID XP_012079425.1
description PREDICTED: probable amino-acid acetyltransferase NAGS1, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q84JF4
description Probable amino-acid acetyltransferase NAGS1, chloroplastic OS=Arabidopsis thaliana GN=NAGS1 PE=2 SV=1
trembl
ID A0A067K764
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12547 PE=3 SV=1
Gene Ontology
ID GO:0005737
description probable amino-acid acetyltransferase chloroplastic isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35136: 75389-87077 , PASA_asmbl_35137: 79319-87077 , PASA_asmbl_35138: 83465-83951 , PASA_asmbl_35140: 79907-80037
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033594_100 0.0 transcription factor TF Family: GNAT PREDICTED: probable amino-acid acetyltransferase NAGS1, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_002518_180 0.1242402201 - - hypothetical protein POPTR_0001s25460g [Populus trichocarpa]
3 Hb_011853_010 0.1359271959 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
4 Hb_001040_150 0.1391142312 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001677_230 0.1423315644 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
6 Hb_101449_010 0.14344567 transcription factor TF Family: bHLH basic helix-loop-helix family protein [Populus trichocarpa]
7 Hb_082683_010 0.150193107 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
8 Hb_006700_040 0.1524328472 - - PREDICTED: vacuolar-sorting receptor 6-like [Jatropha curcas]
9 Hb_000337_010 0.1539456273 - - PREDICTED: proteasome activator subunit 4 isoform X2 [Jatropha curcas]
10 Hb_000138_020 0.1541413102 - - PREDICTED: peroxidase A2-like [Jatropha curcas]
11 Hb_000574_250 0.154641194 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
12 Hb_000816_020 0.1550643469 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
13 Hb_013848_030 0.1569163379 - - PREDICTED: probable aminotransferase TAT2 [Jatropha curcas]
14 Hb_003640_010 0.1618171235 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
15 Hb_000656_200 0.1627846521 - - PREDICTED: uncharacterized protein LOC105631373 [Jatropha curcas]
16 Hb_001963_110 0.1643556777 - - -
17 Hb_098533_010 0.1644309424 - - hypothetical protein L484_003492 [Morus notabilis]
18 Hb_002811_020 0.1662453588 - - Cysteine synthase [Morus notabilis]
19 Hb_006185_030 0.1665567728 - - threonine synthase, putative [Ricinus communis]
20 Hb_002888_060 0.1679601701 - - PREDICTED: phospholipase SGR2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_033594_100 Hb_033594_100 Hb_002518_180 Hb_002518_180 Hb_033594_100--Hb_002518_180 Hb_011853_010 Hb_011853_010 Hb_033594_100--Hb_011853_010 Hb_001040_150 Hb_001040_150 Hb_033594_100--Hb_001040_150 Hb_001677_230 Hb_001677_230 Hb_033594_100--Hb_001677_230 Hb_101449_010 Hb_101449_010 Hb_033594_100--Hb_101449_010 Hb_082683_010 Hb_082683_010 Hb_033594_100--Hb_082683_010 Hb_009535_030 Hb_009535_030 Hb_002518_180--Hb_009535_030 Hb_004007_200 Hb_004007_200 Hb_002518_180--Hb_004007_200 Hb_187959_010 Hb_187959_010 Hb_002518_180--Hb_187959_010 Hb_000970_020 Hb_000970_020 Hb_002518_180--Hb_000970_020 Hb_098533_010 Hb_098533_010 Hb_002518_180--Hb_098533_010 Hb_006700_040 Hb_006700_040 Hb_011853_010--Hb_006700_040 Hb_000227_330 Hb_000227_330 Hb_011853_010--Hb_000227_330 Hb_001235_130 Hb_001235_130 Hb_011853_010--Hb_001235_130 Hb_001307_200 Hb_001307_200 Hb_011853_010--Hb_001307_200 Hb_000922_260 Hb_000922_260 Hb_011853_010--Hb_000922_260 Hb_000125_180 Hb_000125_180 Hb_011853_010--Hb_000125_180 Hb_006185_030 Hb_006185_030 Hb_001040_150--Hb_006185_030 Hb_009803_020 Hb_009803_020 Hb_001040_150--Hb_009803_020 Hb_001040_150--Hb_098533_010 Hb_007229_050 Hb_007229_050 Hb_001040_150--Hb_007229_050 Hb_178968_080 Hb_178968_080 Hb_001040_150--Hb_178968_080 Hb_000625_030 Hb_000625_030 Hb_001040_150--Hb_000625_030 Hb_002888_060 Hb_002888_060 Hb_001677_230--Hb_002888_060 Hb_001619_010 Hb_001619_010 Hb_001677_230--Hb_001619_010 Hb_001677_230--Hb_082683_010 Hb_001963_110 Hb_001963_110 Hb_001677_230--Hb_001963_110 Hb_006096_020 Hb_006096_020 Hb_001677_230--Hb_006096_020 Hb_000009_440 Hb_000009_440 Hb_101449_010--Hb_000009_440 Hb_001268_300 Hb_001268_300 Hb_101449_010--Hb_001268_300 Hb_101449_010--Hb_082683_010 Hb_101449_010--Hb_011853_010 Hb_152868_030 Hb_152868_030 Hb_101449_010--Hb_152868_030 Hb_002420_010 Hb_002420_010 Hb_082683_010--Hb_002420_010 Hb_082683_010--Hb_001268_300 Hb_000816_020 Hb_000816_020 Hb_082683_010--Hb_000816_020 Hb_000527_140 Hb_000527_140 Hb_082683_010--Hb_000527_140 Hb_002003_040 Hb_002003_040 Hb_082683_010--Hb_002003_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.614783 3.09 2.31129 4.46329 0.0891918 0.345702
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.752812 0.349343 0.722611 9.37279 7.34691

CAGE analysis