Hb_000816_020

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig816: 15523-33857
Sequence    

Annotation

kegg
ID pop:POPTR_0014s01150g
description hypothetical protein
nr
ID CDP15919.1
description unnamed protein product [Coffea canephora]
swissprot
ID P23799
description Putative adenylate cyclase regulatory protein OS=Trypanosoma brucei brucei GN=ESAG8 PE=2 SV=1
trembl
ID A0A068V5W7
description Coffea canephora DH200=94 genomic scaffold, scaffold_112 OS=Coffea canephora GN=GSCOC_T00016835001 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59392: 16537-16714 , PASA_asmbl_59394: 17253-17491 , PASA_asmbl_59395: 19097-19339 , PASA_asmbl_59398: 26448-41950 , PASA_asmbl_59399: 26448-41950
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000816_020 0.0 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
2 Hb_082683_010 0.1083010072 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
3 Hb_006096_020 0.1279725629 - - Os06g0343500 [Oryza sativa Japonica Group]
4 Hb_001677_230 0.144470697 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
5 Hb_002420_010 0.1511073158 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
6 Hb_033594_100 0.1550643469 transcription factor TF Family: GNAT PREDICTED: probable amino-acid acetyltransferase NAGS1, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_000811_010 0.1562877077 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF118 [Jatropha curcas]
8 Hb_000661_230 0.1584521503 - - PREDICTED: zinc finger CCCH domain-containing protein 22-like isoform X2 [Jatropha curcas]
9 Hb_006594_060 0.1600201797 transcription factor TF Family: HSF PREDICTED: heat shock factor protein HSF24 [Jatropha curcas]
10 Hb_001014_150 0.1615349949 - - zinc finger protein, putative [Ricinus communis]
11 Hb_000141_010 0.1662858283 - - PREDICTED: uncharacterized protein LOC105632253 [Jatropha curcas]
12 Hb_000138_020 0.1696799994 - - PREDICTED: peroxidase A2-like [Jatropha curcas]
13 Hb_002640_040 0.1718790325 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_002026_080 0.1726388143 desease resistance Gene Name: TIR_2 nucleoside-triphosphatase, putative [Ricinus communis]
15 Hb_000445_030 0.1736269466 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 5 [Jatropha curcas]
16 Hb_000215_250 0.174099842 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
17 Hb_117168_010 0.1764003298 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
18 Hb_003212_010 0.1764516823 - - sucrose transporter 4 [Hevea brasiliensis]
19 Hb_007919_040 0.1769040865 - - PREDICTED: protein LYK5 [Jatropha curcas]
20 Hb_003085_080 0.1780408413 - - nucleic acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000816_020 Hb_000816_020 Hb_082683_010 Hb_082683_010 Hb_000816_020--Hb_082683_010 Hb_006096_020 Hb_006096_020 Hb_000816_020--Hb_006096_020 Hb_001677_230 Hb_001677_230 Hb_000816_020--Hb_001677_230 Hb_002420_010 Hb_002420_010 Hb_000816_020--Hb_002420_010 Hb_033594_100 Hb_033594_100 Hb_000816_020--Hb_033594_100 Hb_000811_010 Hb_000811_010 Hb_000816_020--Hb_000811_010 Hb_082683_010--Hb_002420_010 Hb_001268_300 Hb_001268_300 Hb_082683_010--Hb_001268_300 Hb_000527_140 Hb_000527_140 Hb_082683_010--Hb_000527_140 Hb_002003_040 Hb_002003_040 Hb_082683_010--Hb_002003_040 Hb_082683_010--Hb_001677_230 Hb_006096_020--Hb_001677_230 Hb_012023_010 Hb_012023_010 Hb_006096_020--Hb_012023_010 Hb_001619_010 Hb_001619_010 Hb_006096_020--Hb_001619_010 Hb_006096_020--Hb_082683_010 Hb_000059_080 Hb_000059_080 Hb_006096_020--Hb_000059_080 Hb_002888_060 Hb_002888_060 Hb_001677_230--Hb_002888_060 Hb_001677_230--Hb_001619_010 Hb_001963_110 Hb_001963_110 Hb_001677_230--Hb_001963_110 Hb_001677_230--Hb_033594_100 Hb_002420_010--Hb_002003_040 Hb_000215_250 Hb_000215_250 Hb_002420_010--Hb_000215_250 Hb_007943_020 Hb_007943_020 Hb_002420_010--Hb_007943_020 Hb_000264_340 Hb_000264_340 Hb_002420_010--Hb_000264_340 Hb_000793_040 Hb_000793_040 Hb_002420_010--Hb_000793_040 Hb_002518_180 Hb_002518_180 Hb_033594_100--Hb_002518_180 Hb_011853_010 Hb_011853_010 Hb_033594_100--Hb_011853_010 Hb_001040_150 Hb_001040_150 Hb_033594_100--Hb_001040_150 Hb_101449_010 Hb_101449_010 Hb_033594_100--Hb_101449_010 Hb_033594_100--Hb_082683_010 Hb_006594_060 Hb_006594_060 Hb_000811_010--Hb_006594_060 Hb_000811_010--Hb_082683_010 Hb_000811_010--Hb_002420_010 Hb_000811_010--Hb_000527_140 Hb_000811_010--Hb_000793_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.072973 1.20192 0.318925 0.754539 0.0547372 0.0978069
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0595605 0.0703093 0.195244 2.96631 1.40777

CAGE analysis