Hb_101449_010

Information

Type transcription factor
Description TF Family: bHLH
Location Contig101449: 26237-29037
Sequence    

Annotation

kegg
ID pop:POPTR_0002s24990g
description POPTRDRAFT_553223; basic helix-loop-helix family protein
nr
ID XP_002303073.2
description basic helix-loop-helix family protein [Populus trichocarpa]
swissprot
ID Q9SRT2
description Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1
trembl
ID B9GQN9
description Basic helix-loop-helix family protein OS=Populus trichocarpa GN=POPTR_0002s24990g PE=4 SV=2
Gene Ontology
ID GO:0046983
description transcription factor bhlh62

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00740: 26326-26860
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_101449_010 0.0 transcription factor TF Family: bHLH basic helix-loop-helix family protein [Populus trichocarpa]
2 Hb_033594_100 0.14344567 transcription factor TF Family: GNAT PREDICTED: probable amino-acid acetyltransferase NAGS1, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_000009_440 0.1547213078 - - PREDICTED: uncharacterized protein LOC105639617 [Jatropha curcas]
4 Hb_001268_300 0.1609307366 - - conserved hypothetical protein [Ricinus communis]
5 Hb_082683_010 0.1652809302 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
6 Hb_011853_010 0.1655586837 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
7 Hb_152868_030 0.1660019017 - - abhydrolase domain containing, putative [Ricinus communis]
8 Hb_000077_400 0.1703422645 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
9 Hb_000720_090 0.1722807126 transcription factor TF Family: MYB myb, putative [Ricinus communis]
10 Hb_004007_200 0.1743682303 - - PREDICTED: BTB/POZ domain-containing protein NPY5 [Jatropha curcas]
11 Hb_000337_010 0.1747771152 - - PREDICTED: proteasome activator subunit 4 isoform X2 [Jatropha curcas]
12 Hb_000656_200 0.1768115888 - - PREDICTED: uncharacterized protein LOC105631373 [Jatropha curcas]
13 Hb_003517_100 0.1775271017 transcription factor TF Family: GRAS -
14 Hb_002811_020 0.1781009625 - - Cysteine synthase [Morus notabilis]
15 Hb_000707_010 0.1794274685 - - hypothetical protein JCGZ_25098 [Jatropha curcas]
16 Hb_006700_040 0.1798199706 - - PREDICTED: vacuolar-sorting receptor 6-like [Jatropha curcas]
17 Hb_007229_050 0.1803395489 - - PREDICTED: palmitoyl-protein thioesterase 1 isoform X1 [Jatropha curcas]
18 Hb_000256_160 0.1810815885 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 3-like isoform X1 [Glycine max]
19 Hb_000445_030 0.1818571915 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 5 [Jatropha curcas]
20 Hb_001307_200 0.1828033796 - - PREDICTED: uncharacterized protein LOC105644489 [Jatropha curcas]

Gene co-expression network

sample Hb_101449_010 Hb_101449_010 Hb_033594_100 Hb_033594_100 Hb_101449_010--Hb_033594_100 Hb_000009_440 Hb_000009_440 Hb_101449_010--Hb_000009_440 Hb_001268_300 Hb_001268_300 Hb_101449_010--Hb_001268_300 Hb_082683_010 Hb_082683_010 Hb_101449_010--Hb_082683_010 Hb_011853_010 Hb_011853_010 Hb_101449_010--Hb_011853_010 Hb_152868_030 Hb_152868_030 Hb_101449_010--Hb_152868_030 Hb_002518_180 Hb_002518_180 Hb_033594_100--Hb_002518_180 Hb_033594_100--Hb_011853_010 Hb_001040_150 Hb_001040_150 Hb_033594_100--Hb_001040_150 Hb_001677_230 Hb_001677_230 Hb_033594_100--Hb_001677_230 Hb_033594_100--Hb_082683_010 Hb_010672_080 Hb_010672_080 Hb_000009_440--Hb_010672_080 Hb_000720_090 Hb_000720_090 Hb_000009_440--Hb_000720_090 Hb_000707_010 Hb_000707_010 Hb_000009_440--Hb_000707_010 Hb_000625_030 Hb_000625_030 Hb_000009_440--Hb_000625_030 Hb_004041_100 Hb_004041_100 Hb_000009_440--Hb_004041_100 Hb_003517_100 Hb_003517_100 Hb_001268_300--Hb_003517_100 Hb_000417_280 Hb_000417_280 Hb_001268_300--Hb_000417_280 Hb_042202_020 Hb_042202_020 Hb_001268_300--Hb_042202_020 Hb_009193_060 Hb_009193_060 Hb_001268_300--Hb_009193_060 Hb_001268_300--Hb_082683_010 Hb_073973_020 Hb_073973_020 Hb_001268_300--Hb_073973_020 Hb_002420_010 Hb_002420_010 Hb_082683_010--Hb_002420_010 Hb_000816_020 Hb_000816_020 Hb_082683_010--Hb_000816_020 Hb_000527_140 Hb_000527_140 Hb_082683_010--Hb_000527_140 Hb_002003_040 Hb_002003_040 Hb_082683_010--Hb_002003_040 Hb_082683_010--Hb_001677_230 Hb_006700_040 Hb_006700_040 Hb_011853_010--Hb_006700_040 Hb_000227_330 Hb_000227_330 Hb_011853_010--Hb_000227_330 Hb_001235_130 Hb_001235_130 Hb_011853_010--Hb_001235_130 Hb_001307_200 Hb_001307_200 Hb_011853_010--Hb_001307_200 Hb_000922_260 Hb_000922_260 Hb_011853_010--Hb_000922_260 Hb_000125_180 Hb_000125_180 Hb_011853_010--Hb_000125_180 Hb_027380_190 Hb_027380_190 Hb_152868_030--Hb_027380_190 Hb_005015_110 Hb_005015_110 Hb_152868_030--Hb_005015_110 Hb_002170_020 Hb_002170_020 Hb_152868_030--Hb_002170_020 Hb_003025_030 Hb_003025_030 Hb_152868_030--Hb_003025_030 Hb_000465_150 Hb_000465_150 Hb_152868_030--Hb_000465_150 Hb_011633_040 Hb_011633_040 Hb_152868_030--Hb_011633_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.974164 5.83309 4.7455 5.67052 0.184958 0.0586567
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.493871 2.34849 0.769853 12.9542 9.93922

CAGE analysis