Hb_010672_080

Information

Type transcription factor
Description TF Family: MYB
Location Contig10672: 53075-56382
Sequence    

Annotation

kegg
ID rcu:RCOM_1302620
description hypothetical protein
nr
ID KDP39145.1
description hypothetical protein JCGZ_00902 [Jatropha curcas]
swissprot
ID Q0JIC2
description Transcription factor GAMYB OS=Oryza sativa subsp. japonica GN=GAM1 PE=2 SV=1
trembl
ID A0A067L3R9
description MYB family protein OS=Jatropha curcas GN=JCGZ_00902 PE=4 SV=1
Gene Ontology
ID GO:0005488
description transcription factor myb811

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010672_080 0.0 transcription factor TF Family: MYB hypothetical protein JCGZ_00902 [Jatropha curcas]
2 Hb_000009_440 0.1275385572 - - PREDICTED: uncharacterized protein LOC105639617 [Jatropha curcas]
3 Hb_000720_090 0.1663051922 transcription factor TF Family: MYB myb, putative [Ricinus communis]
4 Hb_000707_010 0.1817262082 - - hypothetical protein JCGZ_25098 [Jatropha curcas]
5 Hb_000625_030 0.1820209834 - - PREDICTED: calmodulin-lysine N-methyltransferase [Jatropha curcas]
6 Hb_003086_010 0.1834595127 - - hypothetical protein JCGZ_06093 [Jatropha curcas]
7 Hb_000343_040 0.1837769044 - - PREDICTED: ras-related protein RHN1-like [Jatropha curcas]
8 Hb_008749_020 0.1906632894 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004041_100 0.1960015519 - - -
10 Hb_001205_060 0.2023475148 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
11 Hb_046998_010 0.2052069406 desease resistance Gene Name: LRR_4 Disease resistance protein RPM1, putative [Ricinus communis]
12 Hb_001405_150 0.2067201521 - - PREDICTED: protein At-4/1 [Jatropha curcas]
13 Hb_000699_050 0.2093115894 - - -
14 Hb_000116_120 0.2133962616 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
15 Hb_000181_020 0.2171194399 - - PREDICTED: D-amino-acid transaminase, chloroplastic-like [Jatropha curcas]
16 Hb_002811_020 0.2175965324 - - Cysteine synthase [Morus notabilis]
17 Hb_009296_060 0.2218369233 - - glutathione s-transferase, putative [Ricinus communis]
18 Hb_002186_070 0.2232090927 - - kinase, putative [Ricinus communis]
19 Hb_000753_180 0.2238864342 - - PREDICTED: dirigent protein 22-like [Jatropha curcas]
20 Hb_007130_010 0.2246694907 - - -

Gene co-expression network

sample Hb_010672_080 Hb_010672_080 Hb_000009_440 Hb_000009_440 Hb_010672_080--Hb_000009_440 Hb_000720_090 Hb_000720_090 Hb_010672_080--Hb_000720_090 Hb_000707_010 Hb_000707_010 Hb_010672_080--Hb_000707_010 Hb_000625_030 Hb_000625_030 Hb_010672_080--Hb_000625_030 Hb_003086_010 Hb_003086_010 Hb_010672_080--Hb_003086_010 Hb_000343_040 Hb_000343_040 Hb_010672_080--Hb_000343_040 Hb_101449_010 Hb_101449_010 Hb_000009_440--Hb_101449_010 Hb_000009_440--Hb_000720_090 Hb_000009_440--Hb_000707_010 Hb_000009_440--Hb_000625_030 Hb_004041_100 Hb_004041_100 Hb_000009_440--Hb_004041_100 Hb_000720_090--Hb_000707_010 Hb_000720_090--Hb_000625_030 Hb_008749_020 Hb_008749_020 Hb_000720_090--Hb_008749_020 Hb_000042_380 Hb_000042_380 Hb_000720_090--Hb_000042_380 Hb_002527_060 Hb_002527_060 Hb_000720_090--Hb_002527_060 Hb_008695_150 Hb_008695_150 Hb_000720_090--Hb_008695_150 Hb_134911_010 Hb_134911_010 Hb_000707_010--Hb_134911_010 Hb_000077_400 Hb_000077_400 Hb_000707_010--Hb_000077_400 Hb_021409_140 Hb_021409_140 Hb_000707_010--Hb_021409_140 Hb_000707_010--Hb_000042_380 Hb_001439_040 Hb_001439_040 Hb_000707_010--Hb_001439_040 Hb_000625_030--Hb_008749_020 Hb_000625_030--Hb_004041_100 Hb_000181_020 Hb_000181_020 Hb_000625_030--Hb_000181_020 Hb_001500_070 Hb_001500_070 Hb_000625_030--Hb_001500_070 Hb_001040_150 Hb_001040_150 Hb_000625_030--Hb_001040_150 Hb_172426_050 Hb_172426_050 Hb_003086_010--Hb_172426_050 Hb_000116_120 Hb_000116_120 Hb_003086_010--Hb_000116_120 Hb_003086_010--Hb_000720_090 Hb_003086_010--Hb_021409_140 Hb_078081_010 Hb_078081_010 Hb_003086_010--Hb_078081_010 Hb_001405_150 Hb_001405_150 Hb_003086_010--Hb_001405_150 Hb_009296_060 Hb_009296_060 Hb_000343_040--Hb_009296_060 Hb_000457_130 Hb_000457_130 Hb_000343_040--Hb_000457_130 Hb_000699_050 Hb_000699_050 Hb_000343_040--Hb_000699_050 Hb_006916_020 Hb_006916_020 Hb_000343_040--Hb_006916_020 Hb_000844_090 Hb_000844_090 Hb_000343_040--Hb_000844_090 Hb_000566_110 Hb_000566_110 Hb_000343_040--Hb_000566_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0606837 0.135275 0.10846 0.0326844 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0505792 0.0397955 0 0.388297 0.209585

CAGE analysis