Hb_000343_040

Information

Type -
Description -
Location Contig343: 35679-38619
Sequence    

Annotation

kegg
ID pop:POPTR_0003s05370g
description POPTRDRAFT_830685; hypothetical protein
nr
ID XP_012073339.1
description PREDICTED: ras-related protein RHN1-like [Jatropha curcas]
swissprot
ID P31583
description Ras-related protein RHN1 OS=Nicotiana plumbaginifolia GN=RHN1 PE=2 SV=1
trembl
ID A0A067KQI7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06269 PE=3 SV=1
Gene Ontology
ID GO:0005622
description ras-related protein rhn1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35827: 35753-37739
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000343_040 0.0 - - PREDICTED: ras-related protein RHN1-like [Jatropha curcas]
2 Hb_009296_060 0.1195384535 - - glutathione s-transferase, putative [Ricinus communis]
3 Hb_000457_130 0.1389862932 - - hypothetical protein AALP_AA3G009100 [Arabis alpina]
4 Hb_000699_050 0.1442989065 - - -
5 Hb_006916_020 0.1531673408 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
6 Hb_000844_090 0.159539356 - - PREDICTED: cytochrome P450 82C4-like [Jatropha curcas]
7 Hb_000566_110 0.1698293956 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Prunus mume]
8 Hb_005333_210 0.1702244146 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
9 Hb_000753_180 0.1705085629 - - PREDICTED: dirigent protein 22-like [Jatropha curcas]
10 Hb_009812_010 0.1712752129 - - ABC transporter family protein [Hevea brasiliensis]
11 Hb_001300_140 0.1715351652 - - -
12 Hb_001004_130 0.1717021239 - - PREDICTED: chalcone synthase 3 [Jatropha curcas]
13 Hb_004128_090 0.173242069 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 44 [Jatropha curcas]
14 Hb_009150_060 0.1817556949 - - PREDICTED: cytochrome P450 CYP749A22-like [Prunus mume]
15 Hb_004586_110 0.1828118166 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
16 Hb_010672_080 0.1837769044 transcription factor TF Family: MYB hypothetical protein JCGZ_00902 [Jatropha curcas]
17 Hb_011440_010 0.1841539394 - - PREDICTED: metalloendoproteinase 1-like [Pyrus x bretschneideri]
18 Hb_009486_100 0.1844416664 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_002200_060 0.1882531664 - - PREDICTED: pleckstrin homology domain-containing family A member 8 [Jatropha curcas]
20 Hb_004010_090 0.1884314602 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000343_040 Hb_000343_040 Hb_009296_060 Hb_009296_060 Hb_000343_040--Hb_009296_060 Hb_000457_130 Hb_000457_130 Hb_000343_040--Hb_000457_130 Hb_000699_050 Hb_000699_050 Hb_000343_040--Hb_000699_050 Hb_006916_020 Hb_006916_020 Hb_000343_040--Hb_006916_020 Hb_000844_090 Hb_000844_090 Hb_000343_040--Hb_000844_090 Hb_000566_110 Hb_000566_110 Hb_000343_040--Hb_000566_110 Hb_000753_180 Hb_000753_180 Hb_009296_060--Hb_000753_180 Hb_001439_040 Hb_001439_040 Hb_009296_060--Hb_001439_040 Hb_009296_060--Hb_000699_050 Hb_005333_210 Hb_005333_210 Hb_009296_060--Hb_005333_210 Hb_011440_010 Hb_011440_010 Hb_009296_060--Hb_011440_010 Hb_000465_180 Hb_000465_180 Hb_000457_130--Hb_000465_180 Hb_001597_110 Hb_001597_110 Hb_000457_130--Hb_001597_110 Hb_001300_140 Hb_001300_140 Hb_000457_130--Hb_001300_140 Hb_009812_010 Hb_009812_010 Hb_000457_130--Hb_009812_010 Hb_000457_130--Hb_000844_090 Hb_011576_010 Hb_011576_010 Hb_000457_130--Hb_011576_010 Hb_000473_070 Hb_000473_070 Hb_000699_050--Hb_000473_070 Hb_000699_050--Hb_000457_130 Hb_001366_050 Hb_001366_050 Hb_000699_050--Hb_001366_050 Hb_000699_050--Hb_000753_180 Hb_006916_020--Hb_000753_180 Hb_004128_090 Hb_004128_090 Hb_006916_020--Hb_004128_090 Hb_001004_130 Hb_001004_130 Hb_006916_020--Hb_001004_130 Hb_004010_090 Hb_004010_090 Hb_006916_020--Hb_004010_090 Hb_004586_110 Hb_004586_110 Hb_006916_020--Hb_004586_110 Hb_006916_020--Hb_001300_140 Hb_000844_090--Hb_001004_130 Hb_000844_090--Hb_001300_140 Hb_000844_090--Hb_011440_010 Hb_001005_210 Hb_001005_210 Hb_000844_090--Hb_001005_210 Hb_000844_090--Hb_005333_210 Hb_000844_090--Hb_004586_110 Hb_000566_110--Hb_001005_210 Hb_000075_030 Hb_000075_030 Hb_000566_110--Hb_000075_030 Hb_000566_110--Hb_001004_130 Hb_106321_010 Hb_106321_010 Hb_000566_110--Hb_106321_010 Hb_000566_110--Hb_009296_060 Hb_000215_420 Hb_000215_420 Hb_000566_110--Hb_000215_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.31596 4.12039 2.11504 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.864512 0.291352 0.0883574 13.0807 4.51276

CAGE analysis