Hb_000473_070

Information

Type -
Description -
Location Contig473: 79453-83182
Sequence    

Annotation

kegg
ID pmum:103327037
description amino-acid permease BAT1 homolog
nr
ID XP_012081956.1
description PREDICTED: amino-acid permease BAT1 homolog [Jatropha curcas]
swissprot
ID B9EXZ6
description Amino-acid permease BAT1 homolog OS=Oryza sativa subsp. japonica GN=BAT1 PE=2 SV=1
trembl
ID A0A067JZQ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19290 PE=4 SV=1
Gene Ontology
ID GO:0016021
description amino-acid permease bat1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44416: 79476-81311 , PASA_asmbl_44417: 81319-82213 , PASA_asmbl_44418: 82233-82433
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000473_070 0.0 - - PREDICTED: amino-acid permease BAT1 homolog [Jatropha curcas]
2 Hb_002200_060 0.1335498406 - - PREDICTED: pleckstrin homology domain-containing family A member 8 [Jatropha curcas]
3 Hb_002272_230 0.1457787695 - - sodium/hydrogen exchanger, putative [Ricinus communis]
4 Hb_003842_010 0.1477274127 - - receptor protein kinase, putative [Ricinus communis]
5 Hb_009296_060 0.1541990373 - - glutathione s-transferase, putative [Ricinus communis]
6 Hb_000699_050 0.1566748325 - - -
7 Hb_001345_010 0.1586245265 - - hypothetical protein MIMGU_mgv1a010889mg [Erythranthe guttata]
8 Hb_025526_080 0.1587428825 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Vitis vinifera]
9 Hb_001474_010 0.1589030209 - - PREDICTED: synaptotagmin-3 isoform X1 [Jatropha curcas]
10 Hb_000085_290 0.1660078787 - - PREDICTED: putative MO25-like protein At5g47540 [Jatropha curcas]
11 Hb_006916_020 0.1664114113 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
12 Hb_004586_110 0.1676028508 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
13 Hb_000753_180 0.1682348838 - - PREDICTED: dirigent protein 22-like [Jatropha curcas]
14 Hb_001358_120 0.1714372759 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like [Populus euphratica]
15 Hb_002811_020 0.171865973 - - Cysteine synthase [Morus notabilis]
16 Hb_002685_100 0.1750068896 - - low temperature inducible SLTI66 [Glycine max]
17 Hb_000684_490 0.1774192992 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 44 [Jatropha curcas]
18 Hb_004128_090 0.1775340482 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 44 [Jatropha curcas]
19 Hb_000521_360 0.1788850777 - - PREDICTED: beta-glucosidase 17-like [Jatropha curcas]
20 Hb_000471_010 0.1792258241 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000473_070 Hb_000473_070 Hb_002200_060 Hb_002200_060 Hb_000473_070--Hb_002200_060 Hb_002272_230 Hb_002272_230 Hb_000473_070--Hb_002272_230 Hb_003842_010 Hb_003842_010 Hb_000473_070--Hb_003842_010 Hb_009296_060 Hb_009296_060 Hb_000473_070--Hb_009296_060 Hb_000699_050 Hb_000699_050 Hb_000473_070--Hb_000699_050 Hb_001345_010 Hb_001345_010 Hb_000473_070--Hb_001345_010 Hb_000521_360 Hb_000521_360 Hb_002200_060--Hb_000521_360 Hb_002200_060--Hb_002272_230 Hb_000265_080 Hb_000265_080 Hb_002200_060--Hb_000265_080 Hb_006788_150 Hb_006788_150 Hb_002200_060--Hb_006788_150 Hb_004800_220 Hb_004800_220 Hb_002200_060--Hb_004800_220 Hb_004631_080 Hb_004631_080 Hb_002272_230--Hb_004631_080 Hb_004041_100 Hb_004041_100 Hb_002272_230--Hb_004041_100 Hb_025526_080 Hb_025526_080 Hb_002272_230--Hb_025526_080 Hb_000347_110 Hb_000347_110 Hb_002272_230--Hb_000347_110 Hb_002030_170 Hb_002030_170 Hb_002272_230--Hb_002030_170 Hb_003842_010--Hb_001345_010 Hb_005276_220 Hb_005276_220 Hb_003842_010--Hb_005276_220 Hb_002475_030 Hb_002475_030 Hb_003842_010--Hb_002475_030 Hb_000203_080 Hb_000203_080 Hb_003842_010--Hb_000203_080 Hb_003085_080 Hb_003085_080 Hb_003842_010--Hb_003085_080 Hb_009150_060 Hb_009150_060 Hb_003842_010--Hb_009150_060 Hb_000343_040 Hb_000343_040 Hb_009296_060--Hb_000343_040 Hb_000753_180 Hb_000753_180 Hb_009296_060--Hb_000753_180 Hb_001439_040 Hb_001439_040 Hb_009296_060--Hb_001439_040 Hb_009296_060--Hb_000699_050 Hb_005333_210 Hb_005333_210 Hb_009296_060--Hb_005333_210 Hb_011440_010 Hb_011440_010 Hb_009296_060--Hb_011440_010 Hb_000699_050--Hb_000343_040 Hb_000457_130 Hb_000457_130 Hb_000699_050--Hb_000457_130 Hb_001366_050 Hb_001366_050 Hb_000699_050--Hb_001366_050 Hb_000699_050--Hb_000753_180 Hb_007676_040 Hb_007676_040 Hb_001345_010--Hb_007676_040 Hb_001345_010--Hb_000521_360 Hb_005542_040 Hb_005542_040 Hb_001345_010--Hb_005542_040 Hb_001565_010 Hb_001565_010 Hb_001345_010--Hb_001565_010 Hb_001345_010--Hb_005276_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0232577 0.496291 1.14329 0.46614 0.056721 0.170199
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0264571 0.062448 0 2.80331 0.788247

CAGE analysis