Hb_025526_080

Information

Type -
Description -
Location Contig25526: 95603-111974
Sequence    

Annotation

kegg
ID vvi:100258925
description G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
nr
ID XP_010644282.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Vitis vinifera]
swissprot
ID O81832
description G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 OS=Arabidopsis thaliana GN=At4g27290 PE=3 SV=4
trembl
ID B9SSB2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1228290 PE=4 SV=1
Gene Ontology
ID GO:0004674
description g-type lectin s-receptor-like serine threonine-protein kinase at4g27290

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26632: 103981-104810 , PASA_asmbl_26634: 105723-106143 , PASA_asmbl_26635: 108963-110140 , PASA_asmbl_26636: 111958-112145
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025526_080 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Vitis vinifera]
2 Hb_002272_230 0.1311842139 - - sodium/hydrogen exchanger, putative [Ricinus communis]
3 Hb_031042_030 0.1553001451 - - PREDICTED: WAT1-related protein At5g47470-like isoform X1 [Jatropha curcas]
4 Hb_004631_080 0.1559402289 - - P3B-ATPase PH1 [Petunia x hybrida]
5 Hb_000473_070 0.1587428825 - - PREDICTED: amino-acid permease BAT1 homolog [Jatropha curcas]
6 Hb_004800_220 0.1598588127 - - PREDICTED: random slug protein 5 [Jatropha curcas]
7 Hb_004656_010 0.1612817837 - - PREDICTED: probable calcium-binding protein CML49 [Jatropha curcas]
8 Hb_001014_150 0.1634489594 - - zinc finger protein, putative [Ricinus communis]
9 Hb_009898_030 0.164012498 - - PREDICTED: uncharacterized protein LOC103720281 [Phoenix dactylifera]
10 Hb_002030_170 0.1656021851 - - PREDICTED: calcium-transporting ATPase 1-like [Jatropha curcas]
11 Hb_001474_010 0.1657875131 - - PREDICTED: synaptotagmin-3 isoform X1 [Jatropha curcas]
12 Hb_000847_020 0.1679197462 - - PREDICTED: ras-related protein RABA5b [Jatropha curcas]
13 Hb_002200_060 0.1683974241 - - PREDICTED: pleckstrin homology domain-containing family A member 8 [Jatropha curcas]
14 Hb_000453_130 0.1706332018 - - PREDICTED: protein kinase 2A, chloroplastic-like [Jatropha curcas]
15 Hb_003842_010 0.1711382452 - - receptor protein kinase, putative [Ricinus communis]
16 Hb_011200_020 0.1747560855 - - aldo-keto reductase, putative [Ricinus communis]
17 Hb_002811_020 0.1750422065 - - Cysteine synthase [Morus notabilis]
18 Hb_001018_080 0.175968548 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003085_080 0.1796108913 - - nucleic acid binding protein, putative [Ricinus communis]
20 Hb_000417_280 0.1802866563 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_025526_080 Hb_025526_080 Hb_002272_230 Hb_002272_230 Hb_025526_080--Hb_002272_230 Hb_031042_030 Hb_031042_030 Hb_025526_080--Hb_031042_030 Hb_004631_080 Hb_004631_080 Hb_025526_080--Hb_004631_080 Hb_000473_070 Hb_000473_070 Hb_025526_080--Hb_000473_070 Hb_004800_220 Hb_004800_220 Hb_025526_080--Hb_004800_220 Hb_004656_010 Hb_004656_010 Hb_025526_080--Hb_004656_010 Hb_002272_230--Hb_004631_080 Hb_004041_100 Hb_004041_100 Hb_002272_230--Hb_004041_100 Hb_000347_110 Hb_000347_110 Hb_002272_230--Hb_000347_110 Hb_002200_060 Hb_002200_060 Hb_002272_230--Hb_002200_060 Hb_002030_170 Hb_002030_170 Hb_002272_230--Hb_002030_170 Hb_001024_030 Hb_001024_030 Hb_031042_030--Hb_001024_030 Hb_002686_390 Hb_002686_390 Hb_031042_030--Hb_002686_390 Hb_011063_060 Hb_011063_060 Hb_031042_030--Hb_011063_060 Hb_000230_230 Hb_000230_230 Hb_031042_030--Hb_000230_230 Hb_011200_020 Hb_011200_020 Hb_031042_030--Hb_011200_020 Hb_000254_040 Hb_000254_040 Hb_031042_030--Hb_000254_040 Hb_004631_080--Hb_002030_170 Hb_004631_080--Hb_000347_110 Hb_001842_060 Hb_001842_060 Hb_004631_080--Hb_001842_060 Hb_000173_260 Hb_000173_260 Hb_004631_080--Hb_000173_260 Hb_000473_070--Hb_002200_060 Hb_000473_070--Hb_002272_230 Hb_003842_010 Hb_003842_010 Hb_000473_070--Hb_003842_010 Hb_009296_060 Hb_009296_060 Hb_000473_070--Hb_009296_060 Hb_000699_050 Hb_000699_050 Hb_000473_070--Hb_000699_050 Hb_001345_010 Hb_001345_010 Hb_000473_070--Hb_001345_010 Hb_004800_220--Hb_002200_060 Hb_000265_080 Hb_000265_080 Hb_004800_220--Hb_000265_080 Hb_008145_010 Hb_008145_010 Hb_004800_220--Hb_008145_010 Hb_008097_020 Hb_008097_020 Hb_004800_220--Hb_008097_020 Hb_012753_190 Hb_012753_190 Hb_004800_220--Hb_012753_190 Hb_000120_310 Hb_000120_310 Hb_004656_010--Hb_000120_310 Hb_003106_230 Hb_003106_230 Hb_004656_010--Hb_003106_230 Hb_001008_110 Hb_001008_110 Hb_004656_010--Hb_001008_110 Hb_000417_280 Hb_000417_280 Hb_004656_010--Hb_000417_280 Hb_003142_060 Hb_003142_060 Hb_004656_010--Hb_003142_060 Hb_064985_010 Hb_064985_010 Hb_004656_010--Hb_064985_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0056085 0.156933 0.166161 0.131231 0.0157445 0.0244847
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0200067 0.0191731 0.471823 0.106944

CAGE analysis