Hb_002030_170

Information

Type -
Description -
Location Contig2030: 211594-219413
Sequence    

Annotation

kegg
ID pop:POPTR_0005s19170g
description POPTRDRAFT_818433; hypothetical protein
nr
ID XP_012081628.1
description PREDICTED: calcium-transporting ATPase 1-like [Jatropha curcas]
swissprot
ID P0ABB8
description Magnesium-transporting ATPase, P-type 1 OS=Escherichia coli (strain K12) GN=mgtA PE=1 SV=1
trembl
ID A0A067KBX9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18670 PE=3 SV=1
Gene Ontology
ID GO:0016021
description calcium-transporting atpase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20830: 212068-213616 , PASA_asmbl_20831: 216440-216793 , PASA_asmbl_20832: 218189-218327
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002030_170 0.0 - - PREDICTED: calcium-transporting ATPase 1-like [Jatropha curcas]
2 Hb_004631_080 0.0900590896 - - P3B-ATPase PH1 [Petunia x hybrida]
3 Hb_001842_060 0.1056908511 desease resistance Gene Name: ABC_trans_N hypothetical protein JCGZ_10908 [Jatropha curcas]
4 Hb_002660_040 0.1361884104 - - PREDICTED: CASP-like protein 5A1 isoform X1 [Jatropha curcas]
5 Hb_002272_230 0.1381376801 - - sodium/hydrogen exchanger, putative [Ricinus communis]
6 Hb_000313_370 0.1382581926 - - ABC transporter family protein [Hevea brasiliensis]
7 Hb_002662_090 0.1392162166 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
8 Hb_001488_280 0.1528216237 - - hypothetical protein JCGZ_19947 [Jatropha curcas]
9 Hb_005880_010 0.1542024135 - - PREDICTED: uncharacterized protein LOC105646431 [Jatropha curcas]
10 Hb_000638_090 0.1542153744 - - ABC transporter family protein [Hevea brasiliensis]
11 Hb_009898_030 0.1550092462 - - PREDICTED: uncharacterized protein LOC103720281 [Phoenix dactylifera]
12 Hb_003576_050 0.1592554296 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
13 Hb_000345_340 0.1603054479 - - PREDICTED: DNA polymerase zeta catalytic subunit [Jatropha curcas]
14 Hb_004218_160 0.1614565599 - - NBS-LRR type disease resistance protein [Medicago truncatula]
15 Hb_001248_030 0.163275922 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_000527_070 0.1654596609 transcription factor TF Family: SNF2 PREDICTED: uncharacterized protein LOC105649495 [Jatropha curcas]
17 Hb_025526_080 0.1656021851 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Vitis vinifera]
18 Hb_000527_140 0.1663469933 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
19 Hb_009823_010 0.1695677476 - - PREDICTED: uncharacterized protein LOC105633096 [Jatropha curcas]
20 Hb_004657_040 0.1712062575 transcription factor TF Family: WRKY WRKY transcription factor 15 family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_002030_170 Hb_002030_170 Hb_004631_080 Hb_004631_080 Hb_002030_170--Hb_004631_080 Hb_001842_060 Hb_001842_060 Hb_002030_170--Hb_001842_060 Hb_002660_040 Hb_002660_040 Hb_002030_170--Hb_002660_040 Hb_002272_230 Hb_002272_230 Hb_002030_170--Hb_002272_230 Hb_000313_370 Hb_000313_370 Hb_002030_170--Hb_000313_370 Hb_002662_090 Hb_002662_090 Hb_002030_170--Hb_002662_090 Hb_004631_080--Hb_002272_230 Hb_000347_110 Hb_000347_110 Hb_004631_080--Hb_000347_110 Hb_004631_080--Hb_001842_060 Hb_025526_080 Hb_025526_080 Hb_004631_080--Hb_025526_080 Hb_000173_260 Hb_000173_260 Hb_004631_080--Hb_000173_260 Hb_002471_140 Hb_002471_140 Hb_001842_060--Hb_002471_140 Hb_001842_060--Hb_002662_090 Hb_000953_040 Hb_000953_040 Hb_001842_060--Hb_000953_040 Hb_000345_340 Hb_000345_340 Hb_001842_060--Hb_000345_340 Hb_000527_140 Hb_000527_140 Hb_002660_040--Hb_000527_140 Hb_064985_010 Hb_064985_010 Hb_002660_040--Hb_064985_010 Hb_005880_010 Hb_005880_010 Hb_002660_040--Hb_005880_010 Hb_002833_020 Hb_002833_020 Hb_002660_040--Hb_002833_020 Hb_001008_110 Hb_001008_110 Hb_002660_040--Hb_001008_110 Hb_006241_010 Hb_006241_010 Hb_002660_040--Hb_006241_010 Hb_004041_100 Hb_004041_100 Hb_002272_230--Hb_004041_100 Hb_002272_230--Hb_025526_080 Hb_002272_230--Hb_000347_110 Hb_002200_060 Hb_002200_060 Hb_002272_230--Hb_002200_060 Hb_000977_010 Hb_000977_010 Hb_000313_370--Hb_000977_010 Hb_003517_020 Hb_003517_020 Hb_000313_370--Hb_003517_020 Hb_003576_050 Hb_003576_050 Hb_000313_370--Hb_003576_050 Hb_001946_150 Hb_001946_150 Hb_000313_370--Hb_001946_150 Hb_000362_110 Hb_000362_110 Hb_000313_370--Hb_000362_110 Hb_001369_160 Hb_001369_160 Hb_002662_090--Hb_001369_160 Hb_002928_180 Hb_002928_180 Hb_002662_090--Hb_002928_180 Hb_004286_030 Hb_004286_030 Hb_002662_090--Hb_004286_030 Hb_010174_190 Hb_010174_190 Hb_002662_090--Hb_010174_190 Hb_003894_100 Hb_003894_100 Hb_002662_090--Hb_003894_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.578459 6.93041 3.45476 1.99181 0.573607 0.808044
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.226651 0.544481 0.288131 10.2851 2.06936

CAGE analysis