Hb_006241_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig6241: 550-8164
Sequence    

Annotation

kegg
ID rcu:RCOM_1331600
description Disease resistance protein RFL1, putative (EC:3.1.3.16)
nr
ID XP_002521789.1
description Disease resistance protein RFL1, putative [Ricinus communis]
swissprot
ID Q9T048
description Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1
trembl
ID B9S720
description Disease resistance protein RFL1, putative OS=Ricinus communis GN=RCOM_1331600 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51620: 547-1262 , PASA_asmbl_51621: 2074-2428 , PASA_asmbl_51623: 5092-5409
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006241_010 0.0 desease resistance Gene Name: NB-ARC Disease resistance protein RFL1, putative [Ricinus communis]
2 Hb_022501_020 0.0822331021 - - AMP dependent CoA ligase, putative [Ricinus communis]
3 Hb_025432_010 0.0987029764 - - hypothetical protein JCGZ_21627 [Jatropha curcas]
4 Hb_008226_120 0.1246921461 - - ATP binding protein, putative [Ricinus communis]
5 Hb_064985_010 0.1250432772 - - Leucine-rich repeat transmembrane protein kinase, putative [Theobroma cacao]
6 Hb_002660_040 0.1251929234 - - PREDICTED: CASP-like protein 5A1 isoform X1 [Jatropha curcas]
7 Hb_012807_060 0.1294895224 - - ABC transporter family protein [Hevea brasiliensis]
8 Hb_010926_010 0.1296739836 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
9 Hb_000527_140 0.1329279913 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
10 Hb_038777_010 0.1337139614 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN2 isoform X1 [Populus euphratica]
11 Hb_001636_010 0.1358584843 - - hypothetical protein JCGZ_01264 [Jatropha curcas]
12 Hb_003453_030 0.139344786 - - hypothetical protein JCGZ_26893 [Jatropha curcas]
13 Hb_001894_040 0.139613478 - - PREDICTED: carbonic anhydrase 2 isoform X1 [Jatropha curcas]
14 Hb_000579_180 0.1402789981 transcription factor TF Family: bZIP PREDICTED: ocs element-binding factor 1-like [Jatropha curcas]
15 Hb_006594_060 0.1403726544 transcription factor TF Family: HSF PREDICTED: heat shock factor protein HSF24 [Jatropha curcas]
16 Hb_010174_190 0.1404379558 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
17 Hb_002551_090 0.1429989913 - - hypothetical protein JCGZ_17224 [Jatropha curcas]
18 Hb_005357_020 0.1442213286 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007123_020 0.1445734573 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HOX3 [Jatropha curcas]
20 Hb_068332_010 0.1447616538 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]

Gene co-expression network

sample Hb_006241_010 Hb_006241_010 Hb_022501_020 Hb_022501_020 Hb_006241_010--Hb_022501_020 Hb_025432_010 Hb_025432_010 Hb_006241_010--Hb_025432_010 Hb_008226_120 Hb_008226_120 Hb_006241_010--Hb_008226_120 Hb_064985_010 Hb_064985_010 Hb_006241_010--Hb_064985_010 Hb_002660_040 Hb_002660_040 Hb_006241_010--Hb_002660_040 Hb_012807_060 Hb_012807_060 Hb_006241_010--Hb_012807_060 Hb_022501_020--Hb_012807_060 Hb_003453_030 Hb_003453_030 Hb_022501_020--Hb_003453_030 Hb_002551_090 Hb_002551_090 Hb_022501_020--Hb_002551_090 Hb_004044_030 Hb_004044_030 Hb_022501_020--Hb_004044_030 Hb_006594_060 Hb_006594_060 Hb_022501_020--Hb_006594_060 Hb_010174_190 Hb_010174_190 Hb_025432_010--Hb_010174_190 Hb_025432_010--Hb_064985_010 Hb_001008_110 Hb_001008_110 Hb_025432_010--Hb_001008_110 Hb_025432_010--Hb_022501_020 Hb_042202_020 Hb_042202_020 Hb_025432_010--Hb_042202_020 Hb_001894_040 Hb_001894_040 Hb_008226_120--Hb_001894_040 Hb_038777_010 Hb_038777_010 Hb_008226_120--Hb_038777_010 Hb_001862_060 Hb_001862_060 Hb_008226_120--Hb_001862_060 Hb_008406_020 Hb_008406_020 Hb_008226_120--Hb_008406_020 Hb_009581_040 Hb_009581_040 Hb_008226_120--Hb_009581_040 Hb_008226_120--Hb_012807_060 Hb_064985_010--Hb_001008_110 Hb_007894_030 Hb_007894_030 Hb_064985_010--Hb_007894_030 Hb_006634_090 Hb_006634_090 Hb_064985_010--Hb_006634_090 Hb_001636_010 Hb_001636_010 Hb_064985_010--Hb_001636_010 Hb_000527_140 Hb_000527_140 Hb_064985_010--Hb_000527_140 Hb_005649_010 Hb_005649_010 Hb_064985_010--Hb_005649_010 Hb_002660_040--Hb_000527_140 Hb_002660_040--Hb_064985_010 Hb_005880_010 Hb_005880_010 Hb_002660_040--Hb_005880_010 Hb_002833_020 Hb_002833_020 Hb_002660_040--Hb_002833_020 Hb_002660_040--Hb_001008_110 Hb_009581_050 Hb_009581_050 Hb_012807_060--Hb_009581_050 Hb_003052_120 Hb_003052_120 Hb_012807_060--Hb_003052_120 Hb_012807_060--Hb_002551_090 Hb_000579_180 Hb_000579_180 Hb_012807_060--Hb_000579_180 Hb_003430_020 Hb_003430_020 Hb_012807_060--Hb_003430_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.298485 20.8948 6.15583 12.2803 0.458378 0.529687
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.163514 0.0890843 1.74564 24.3111 7.02757

CAGE analysis