Hb_010174_190

Information

Type transcription factor
Description TF Family: ARR-B
Location Contig10174: 162394-166608
Sequence    

Annotation

kegg
ID rcu:RCOM_1082510
description two-component sensor histidine kinase bacteria, putative
nr
ID XP_012085580.1
description PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
swissprot
ID Q9FXD6
description Two-component response regulator ARR11 OS=Arabidopsis thaliana GN=ARR11 PE=1 SV=1
trembl
ID A0A067JSA1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17890 PE=4 SV=1
Gene Ontology
ID GO:0003677
description two-component response regulator arr11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00862: 162643-164698 , PASA_asmbl_00863: 165101-166410
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010174_190 0.0 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
2 Hb_025432_010 0.0938516116 - - hypothetical protein JCGZ_21627 [Jatropha curcas]
3 Hb_064985_010 0.1222781622 - - Leucine-rich repeat transmembrane protein kinase, putative [Theobroma cacao]
4 Hb_001008_110 0.1264919564 - - -
5 Hb_022501_020 0.128867378 - - AMP dependent CoA ligase, putative [Ricinus communis]
6 Hb_002928_180 0.1298297396 - - catalase CAT1 [Manihot esculenta]
7 Hb_068332_010 0.1314119717 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
8 Hb_001898_060 0.1326643353 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000527_140 0.1333686755 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
10 Hb_003579_040 0.13700751 - - PREDICTED: monoacylglycerol lipase ABHD6 [Jatropha curcas]
11 Hb_002662_090 0.1376159463 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
12 Hb_000429_110 0.1391375887 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein WIP2-like [Populus euphratica]
13 Hb_002324_050 0.1394495513 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
14 Hb_006241_010 0.1404379558 desease resistance Gene Name: NB-ARC Disease resistance protein RFL1, putative [Ricinus communis]
15 Hb_002660_040 0.1412111068 - - PREDICTED: CASP-like protein 5A1 isoform X1 [Jatropha curcas]
16 Hb_000977_090 0.141255316 - - hypothetical protein POPTR_0010s18550g [Populus trichocarpa]
17 Hb_002028_160 0.1430094156 - - PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Populus euphratica]
18 Hb_003453_030 0.1431842741 - - hypothetical protein JCGZ_26893 [Jatropha curcas]
19 Hb_003142_060 0.1443385172 - - PREDICTED: glutamate synthase 1 [NADH], chloroplastic isoform X1 [Jatropha curcas]
20 Hb_000317_230 0.14534573 - - PREDICTED: equilibrative nucleotide transporter 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_010174_190 Hb_010174_190 Hb_025432_010 Hb_025432_010 Hb_010174_190--Hb_025432_010 Hb_064985_010 Hb_064985_010 Hb_010174_190--Hb_064985_010 Hb_001008_110 Hb_001008_110 Hb_010174_190--Hb_001008_110 Hb_022501_020 Hb_022501_020 Hb_010174_190--Hb_022501_020 Hb_002928_180 Hb_002928_180 Hb_010174_190--Hb_002928_180 Hb_068332_010 Hb_068332_010 Hb_010174_190--Hb_068332_010 Hb_006241_010 Hb_006241_010 Hb_025432_010--Hb_006241_010 Hb_025432_010--Hb_064985_010 Hb_025432_010--Hb_001008_110 Hb_025432_010--Hb_022501_020 Hb_042202_020 Hb_042202_020 Hb_025432_010--Hb_042202_020 Hb_064985_010--Hb_001008_110 Hb_007894_030 Hb_007894_030 Hb_064985_010--Hb_007894_030 Hb_006634_090 Hb_006634_090 Hb_064985_010--Hb_006634_090 Hb_001636_010 Hb_001636_010 Hb_064985_010--Hb_001636_010 Hb_000527_140 Hb_000527_140 Hb_064985_010--Hb_000527_140 Hb_005649_010 Hb_005649_010 Hb_064985_010--Hb_005649_010 Hb_000417_280 Hb_000417_280 Hb_001008_110--Hb_000417_280 Hb_002833_020 Hb_002833_020 Hb_001008_110--Hb_002833_020 Hb_003142_060 Hb_003142_060 Hb_001008_110--Hb_003142_060 Hb_032717_010 Hb_032717_010 Hb_001008_110--Hb_032717_010 Hb_001008_110--Hb_042202_020 Hb_022501_020--Hb_006241_010 Hb_012807_060 Hb_012807_060 Hb_022501_020--Hb_012807_060 Hb_003453_030 Hb_003453_030 Hb_022501_020--Hb_003453_030 Hb_002551_090 Hb_002551_090 Hb_022501_020--Hb_002551_090 Hb_004044_030 Hb_004044_030 Hb_022501_020--Hb_004044_030 Hb_006594_060 Hb_006594_060 Hb_022501_020--Hb_006594_060 Hb_000429_110 Hb_000429_110 Hb_002928_180--Hb_000429_110 Hb_000236_110 Hb_000236_110 Hb_002928_180--Hb_000236_110 Hb_000778_020 Hb_000778_020 Hb_002928_180--Hb_000778_020 Hb_002928_120 Hb_002928_120 Hb_002928_180--Hb_002928_120 Hb_001410_010 Hb_001410_010 Hb_002928_180--Hb_001410_010 Hb_008406_020 Hb_008406_020 Hb_068332_010--Hb_008406_020 Hb_168068_010 Hb_168068_010 Hb_068332_010--Hb_168068_010 Hb_000120_070 Hb_000120_070 Hb_068332_010--Hb_000120_070 Hb_002276_100 Hb_002276_100 Hb_068332_010--Hb_002276_100 Hb_003376_200 Hb_003376_200 Hb_068332_010--Hb_003376_200 Hb_003556_070 Hb_003556_070 Hb_068332_010--Hb_003556_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.587871 13.5254 5.29093 10.731 0.209794 0.586208
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.420474 0.751952 0.429379 13.5222 2.90405

CAGE analysis