Hb_002928_120

Information

Type -
Description -
Location Contig2928: 84430-91760
Sequence    

Annotation

kegg
ID rcu:RCOM_1600980
description starch branching enzyme II, putative (EC:2.4.1.18)
nr
ID CAA54308.1
description 1,4-alpha-glucan branching enzyme [Manihot esculenta]
swissprot
ID Q41059
description 1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic (Fragment) OS=Pisum sativum GN=SBEII PE=1 SV=1
trembl
ID Q08131
description 1,4-alpha-glucan branching enzyme OS=Manihot esculenta GN=SBE PE=2 SV=2
Gene Ontology
ID GO:0003844
description #NAME?

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30689: 84446-91763 , PASA_asmbl_30690: 85312-91763
cDNA
(Sanger)
(ID:Location)		 007_M16.ab1: 89237-91763 , 019_E02.ab1: 89635-91763

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002928_120 0.0 - - 1,4-alpha-glucan branching enzyme [Manihot esculenta]
2 Hb_000793_040 0.1105914859 - - PREDICTED: transcription factor LHW [Jatropha curcas]
3 Hb_002928_180 0.1138938613 - - catalase CAT1 [Manihot esculenta]
4 Hb_001021_030 0.119160834 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
5 Hb_025432_010 0.135842514 - - hypothetical protein JCGZ_21627 [Jatropha curcas]
6 Hb_000429_110 0.1365522357 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein WIP2-like [Populus euphratica]
7 Hb_000236_110 0.1369289661 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic [Jatropha curcas]
8 Hb_000025_400 0.1385289002 - - PREDICTED: uncharacterized protein LOC105110770 [Populus euphratica]
9 Hb_022501_020 0.1398592742 - - AMP dependent CoA ligase, putative [Ricinus communis]
10 Hb_000778_020 0.1410856606 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
11 Hb_000540_040 0.1420970403 - - PREDICTED: chitinase 2 [Amborella trichopoda]
12 Hb_013749_060 0.1444035912 - - PREDICTED: uncharacterized protein LOC105647762 [Jatropha curcas]
13 Hb_010253_020 0.1469280087 - - alcohol dehydrogenase, putative [Ricinus communis]
14 Hb_010174_190 0.1476581147 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
15 Hb_002026_080 0.1486764624 desease resistance Gene Name: TIR_2 nucleoside-triphosphatase, putative [Ricinus communis]
16 Hb_000818_080 0.1487117328 - - PREDICTED: monosaccharide-sensing protein 2 [Jatropha curcas]
17 Hb_002119_070 0.1516145631 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
18 Hb_117168_010 0.1538157147 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
19 Hb_000020_030 0.1539231524 - - protein binding protein, putative [Ricinus communis]
20 Hb_001900_060 0.1542295962 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]

Gene co-expression network

sample Hb_002928_120 Hb_002928_120 Hb_000793_040 Hb_000793_040 Hb_002928_120--Hb_000793_040 Hb_002928_180 Hb_002928_180 Hb_002928_120--Hb_002928_180 Hb_001021_030 Hb_001021_030 Hb_002928_120--Hb_001021_030 Hb_025432_010 Hb_025432_010 Hb_002928_120--Hb_025432_010 Hb_000429_110 Hb_000429_110 Hb_002928_120--Hb_000429_110 Hb_000236_110 Hb_000236_110 Hb_002928_120--Hb_000236_110 Hb_001486_060 Hb_001486_060 Hb_000793_040--Hb_001486_060 Hb_005288_210 Hb_005288_210 Hb_000793_040--Hb_005288_210 Hb_020378_010 Hb_020378_010 Hb_000793_040--Hb_020378_010 Hb_001493_020 Hb_001493_020 Hb_000793_040--Hb_001493_020 Hb_002420_010 Hb_002420_010 Hb_000793_040--Hb_002420_010 Hb_002928_180--Hb_000429_110 Hb_002928_180--Hb_000236_110 Hb_000778_020 Hb_000778_020 Hb_002928_180--Hb_000778_020 Hb_010174_190 Hb_010174_190 Hb_002928_180--Hb_010174_190 Hb_001410_010 Hb_001410_010 Hb_002928_180--Hb_001410_010 Hb_003576_050 Hb_003576_050 Hb_001021_030--Hb_003576_050 Hb_004316_030 Hb_004316_030 Hb_001021_030--Hb_004316_030 Hb_029977_010 Hb_029977_010 Hb_001021_030--Hb_029977_010 Hb_009823_010 Hb_009823_010 Hb_001021_030--Hb_009823_010 Hb_000041_290 Hb_000041_290 Hb_001021_030--Hb_000041_290 Hb_025432_010--Hb_010174_190 Hb_006241_010 Hb_006241_010 Hb_025432_010--Hb_006241_010 Hb_064985_010 Hb_064985_010 Hb_025432_010--Hb_064985_010 Hb_001008_110 Hb_001008_110 Hb_025432_010--Hb_001008_110 Hb_022501_020 Hb_022501_020 Hb_025432_010--Hb_022501_020 Hb_042202_020 Hb_042202_020 Hb_025432_010--Hb_042202_020 Hb_052764_080 Hb_052764_080 Hb_000429_110--Hb_052764_080 Hb_001259_100 Hb_001259_100 Hb_000429_110--Hb_001259_100 Hb_000429_110--Hb_010174_190 Hb_001355_070 Hb_001355_070 Hb_000429_110--Hb_001355_070 Hb_000589_220 Hb_000589_220 Hb_000236_110--Hb_000589_220 Hb_002218_070 Hb_002218_070 Hb_000236_110--Hb_002218_070 Hb_000236_110--Hb_000778_020 Hb_000236_110--Hb_022501_020 Hb_013749_060 Hb_013749_060 Hb_000236_110--Hb_013749_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.20462 102.505 17.2261 99.5296 10.3996 7.80372
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.75788 4.2565 6.20009 123.069 31.1566

CAGE analysis