Hb_001486_060

Information

Type -
Description -
Location Contig1486: 40324-42048
Sequence    

Annotation

kegg
ID rcu:RCOM_1120980
description hypothetical protein
nr
ID XP_012070441.1
description PREDICTED: uncharacterized protein LOC105632622 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L5D2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02715 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12222: 40424-41985
cDNA
(Sanger)
(ID:Location)		 008_O03.ab1: 41139-41819

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001486_060 0.0 - - PREDICTED: uncharacterized protein LOC105632622 [Jatropha curcas]
2 Hb_000818_080 0.0992144032 - - PREDICTED: monosaccharide-sensing protein 2 [Jatropha curcas]
3 Hb_000793_040 0.1093194869 - - PREDICTED: transcription factor LHW [Jatropha curcas]
4 Hb_002026_080 0.1326508069 desease resistance Gene Name: TIR_2 nucleoside-triphosphatase, putative [Ricinus communis]
5 Hb_000483_130 0.1366580004 - - PREDICTED: uncharacterized protein LOC105644062 isoform X1 [Jatropha curcas]
6 Hb_086336_010 0.1467563619 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
7 Hb_004657_080 0.1487011641 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
8 Hb_168180_010 0.149404258 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003371_190 0.1518215217 - - PREDICTED: beta-glucosidase 13-like [Jatropha curcas]
10 Hb_003092_050 0.1527622326 - - PREDICTED: putative chloride channel-like protein CLC-g [Jatropha curcas]
11 Hb_000979_160 0.1529194801 - - hypothetical protein RCOM_0629030 [Ricinus communis]
12 Hb_005288_210 0.1533283188 - - hypothetical protein VITISV_017217 [Vitis vinifera]
13 Hb_002119_070 0.1605638883 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
14 Hb_000959_120 0.1606982513 - - PREDICTED: protein BRASSINOSTEROID INSENSITIVE 1 [Jatropha curcas]
15 Hb_147218_010 0.1618216146 - - Disease resistance protein RPS5, putative [Ricinus communis]
16 Hb_000540_040 0.1633771676 - - PREDICTED: chitinase 2 [Amborella trichopoda]
17 Hb_030565_110 0.1641792233 - - PREDICTED: adenosylhomocysteinase 1 [Jatropha curcas]
18 Hb_001493_020 0.1642280249 - - leucine-rich repeat receptor-like protein kinase [Manihot esculenta]
19 Hb_001304_130 0.1654025577 transcription factor TF Family: GRAS PREDICTED: scarecrow-like transcription factor PAT1 [Jatropha curcas]
20 Hb_020378_010 0.1669255745 - - PREDICTED: acyl-CoA--sterol O-acyltransferase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001486_060 Hb_001486_060 Hb_000818_080 Hb_000818_080 Hb_001486_060--Hb_000818_080 Hb_000793_040 Hb_000793_040 Hb_001486_060--Hb_000793_040 Hb_002026_080 Hb_002026_080 Hb_001486_060--Hb_002026_080 Hb_000483_130 Hb_000483_130 Hb_001486_060--Hb_000483_130 Hb_086336_010 Hb_086336_010 Hb_001486_060--Hb_086336_010 Hb_004657_080 Hb_004657_080 Hb_001486_060--Hb_004657_080 Hb_000818_080--Hb_000793_040 Hb_000818_080--Hb_002026_080 Hb_003371_190 Hb_003371_190 Hb_000818_080--Hb_003371_190 Hb_002928_120 Hb_002928_120 Hb_000818_080--Hb_002928_120 Hb_000818_080--Hb_004657_080 Hb_000793_040--Hb_002928_120 Hb_005288_210 Hb_005288_210 Hb_000793_040--Hb_005288_210 Hb_020378_010 Hb_020378_010 Hb_000793_040--Hb_020378_010 Hb_001493_020 Hb_001493_020 Hb_000793_040--Hb_001493_020 Hb_002420_010 Hb_002420_010 Hb_000793_040--Hb_002420_010 Hb_002026_080--Hb_000793_040 Hb_000834_040 Hb_000834_040 Hb_002026_080--Hb_000834_040 Hb_000702_060 Hb_000702_060 Hb_002026_080--Hb_000702_060 Hb_002026_080--Hb_001493_020 Hb_003226_030 Hb_003226_030 Hb_000483_130--Hb_003226_030 Hb_000095_070 Hb_000095_070 Hb_000483_130--Hb_000095_070 Hb_000362_050 Hb_000362_050 Hb_000483_130--Hb_000362_050 Hb_073808_010 Hb_073808_010 Hb_000483_130--Hb_073808_010 Hb_007943_020 Hb_007943_020 Hb_000483_130--Hb_007943_020 Hb_147218_010 Hb_147218_010 Hb_086336_010--Hb_147218_010 Hb_001304_130 Hb_001304_130 Hb_086336_010--Hb_001304_130 Hb_086336_010--Hb_003371_190 Hb_086336_010--Hb_000818_080 Hb_086336_010--Hb_005288_210 Hb_078361_010 Hb_078361_010 Hb_004657_080--Hb_078361_010 Hb_000020_030 Hb_000020_030 Hb_004657_080--Hb_000020_030 Hb_001728_130 Hb_001728_130 Hb_004657_080--Hb_001728_130 Hb_116194_010 Hb_116194_010 Hb_004657_080--Hb_116194_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.08018 54.9959 20.4826 118.702 5.68251 16.6953
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.13995 3.16299 6.17438 113.273 57.1802

CAGE analysis