Hb_004657_080

Information

Type -
Description -
Location Contig4657: 79746-84650
Sequence    

Annotation

kegg
ID rcu:RCOM_0550790
description receptor protein kinase, putative
nr
ID XP_012079291.1
description PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
swissprot
ID Q93Y06
description Probable inactive receptor kinase At5g67200 OS=Arabidopsis thaliana GN=At5g67200 PE=1 SV=1
trembl
ID A0A067KI81
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12441 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable inactive receptor kinase at5g67200

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44054: 79140-79363 , PASA_asmbl_44057: 79828-84533
cDNA
(Sanger)
(ID:Location)		 009_F10.ab1: 79858-80395 , 020_O13.ab1: 79828-80560 , 037_P04.ab1: 79828-80612 , 041_F19.ab1: 79828-80584 , 045_G08.ab1: 79828-80590 , 049_M18.ab1: 79860-80195 , 050_G05.ab1: 79828-80187

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004657_080 0.0 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
2 Hb_078361_010 0.1471259534 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
3 Hb_001486_060 0.1487011641 - - PREDICTED: uncharacterized protein LOC105632622 [Jatropha curcas]
4 Hb_000020_030 0.1491141852 - - protein binding protein, putative [Ricinus communis]
5 Hb_000818_080 0.1502102498 - - PREDICTED: monosaccharide-sensing protein 2 [Jatropha curcas]
6 Hb_001728_130 0.1516951626 - - alcohol dehydrogenase, putative [Ricinus communis]
7 Hb_116194_010 0.153044597 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
8 Hb_135720_010 0.1548177344 - - hypothetical protein JCGZ_17857 [Jatropha curcas]
9 Hb_001663_120 0.1635257233 - - PREDICTED: formin-like protein 1 isoform X1 [Jatropha curcas]
10 Hb_000793_040 0.165293155 - - PREDICTED: transcription factor LHW [Jatropha curcas]
11 Hb_001159_170 0.1674745315 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
12 Hb_000540_040 0.16935328 - - PREDICTED: chitinase 2 [Amborella trichopoda]
13 Hb_020805_190 0.1699215406 transcription factor TF Family: HB DNA binding protein, putative [Ricinus communis]
14 Hb_001564_090 0.172938065 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002042_160 0.1734821831 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
16 Hb_000115_290 0.1740856445 - - PREDICTED: uncharacterized protein LOC105124123 [Populus euphratica]
17 Hb_002814_050 0.174387539 - - PREDICTED: sugar carrier protein A [Jatropha curcas]
18 Hb_005288_210 0.1753692247 - - hypothetical protein VITISV_017217 [Vitis vinifera]
19 Hb_000979_160 0.1755188673 - - hypothetical protein RCOM_0629030 [Ricinus communis]
20 Hb_000959_120 0.1780667425 - - PREDICTED: protein BRASSINOSTEROID INSENSITIVE 1 [Jatropha curcas]

Gene co-expression network

sample Hb_004657_080 Hb_004657_080 Hb_078361_010 Hb_078361_010 Hb_004657_080--Hb_078361_010 Hb_001486_060 Hb_001486_060 Hb_004657_080--Hb_001486_060 Hb_000020_030 Hb_000020_030 Hb_004657_080--Hb_000020_030 Hb_000818_080 Hb_000818_080 Hb_004657_080--Hb_000818_080 Hb_001728_130 Hb_001728_130 Hb_004657_080--Hb_001728_130 Hb_116194_010 Hb_116194_010 Hb_004657_080--Hb_116194_010 Hb_006846_030 Hb_006846_030 Hb_078361_010--Hb_006846_030 Hb_000095_070 Hb_000095_070 Hb_078361_010--Hb_000095_070 Hb_078361_010--Hb_001728_130 Hb_012743_020 Hb_012743_020 Hb_078361_010--Hb_012743_020 Hb_002042_160 Hb_002042_160 Hb_078361_010--Hb_002042_160 Hb_164117_010 Hb_164117_010 Hb_078361_010--Hb_164117_010 Hb_001486_060--Hb_000818_080 Hb_000793_040 Hb_000793_040 Hb_001486_060--Hb_000793_040 Hb_002026_080 Hb_002026_080 Hb_001486_060--Hb_002026_080 Hb_000483_130 Hb_000483_130 Hb_001486_060--Hb_000483_130 Hb_086336_010 Hb_086336_010 Hb_001486_060--Hb_086336_010 Hb_007943_020 Hb_007943_020 Hb_000020_030--Hb_007943_020 Hb_002970_070 Hb_002970_070 Hb_000020_030--Hb_002970_070 Hb_000020_030--Hb_002042_160 Hb_022501_020 Hb_022501_020 Hb_000020_030--Hb_022501_020 Hb_003226_030 Hb_003226_030 Hb_000020_030--Hb_003226_030 Hb_005357_020 Hb_005357_020 Hb_000020_030--Hb_005357_020 Hb_000818_080--Hb_000793_040 Hb_000818_080--Hb_002026_080 Hb_003371_190 Hb_003371_190 Hb_000818_080--Hb_003371_190 Hb_002928_120 Hb_002928_120 Hb_000818_080--Hb_002928_120 Hb_001728_130--Hb_000095_070 Hb_014361_040 Hb_014361_040 Hb_001728_130--Hb_014361_040 Hb_135720_010 Hb_135720_010 Hb_001728_130--Hb_135720_010 Hb_005545_110 Hb_005545_110 Hb_001728_130--Hb_005545_110 Hb_001728_130--Hb_164117_010 Hb_073808_010 Hb_073808_010 Hb_001728_130--Hb_073808_010 Hb_032260_130 Hb_032260_130 Hb_116194_010--Hb_032260_130 Hb_000115_290 Hb_000115_290 Hb_116194_010--Hb_000115_290 Hb_116194_010--Hb_164117_010 Hb_116194_010--Hb_002042_160 Hb_002814_050 Hb_002814_050 Hb_116194_010--Hb_002814_050 Hb_004785_090 Hb_004785_090 Hb_116194_010--Hb_004785_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.51893 19.3783 3.51719 41.3247 2.14438 0.737465
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.123538 2.74628 0.348324 32.6601 16.756

CAGE analysis