Hb_000483_130

Information

Type -
Description -
Location Contig483: 120161-124005
Sequence    

Annotation

kegg
ID rcu:RCOM_0170220
description 60S ribosomal protein L34, putative
nr
ID XP_012084697.1
description PREDICTED: uncharacterized protein LOC105644062 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9T740
description 60S ribosomal protein L34, putative OS=Ricinus communis GN=RCOM_0170220 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000483_130 0.0 - - PREDICTED: uncharacterized protein LOC105644062 isoform X1 [Jatropha curcas]
2 Hb_003226_030 0.1212297772 - - sucrose synthase 5 [Hevea brasiliensis]
3 Hb_000095_070 0.1247252903 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000362_050 0.1302076046 transcription factor TF Family: NOZZLE PREDICTED: uncharacterized protein LOC105635737 [Jatropha curcas]
5 Hb_073808_010 0.136425044 desease resistance Gene Name: DUF594 ATP binding protein, putative [Ricinus communis]
6 Hb_001486_060 0.1366580004 - - PREDICTED: uncharacterized protein LOC105632622 [Jatropha curcas]
7 Hb_007943_020 0.1388129069 - - transcription factor, putative [Ricinus communis]
8 Hb_001189_100 0.1404749317 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 2-like [Jatropha curcas]
9 Hb_000210_140 0.1435303269 - - PREDICTED: uncharacterized protein LOC105635827 [Jatropha curcas]
10 Hb_002671_060 0.1474141445 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 [Jatropha curcas]
11 Hb_007632_130 0.149263321 - - PREDICTED: nudix hydrolase 10-like isoform X1 [Jatropha curcas]
12 Hb_001728_130 0.152475065 - - alcohol dehydrogenase, putative [Ricinus communis]
13 Hb_005288_210 0.152997152 - - hypothetical protein VITISV_017217 [Vitis vinifera]
14 Hb_000085_380 0.1532930264 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006153_130 0.1544021243 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
16 Hb_136033_010 0.1557568107 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3 [Gossypium raimondii]
17 Hb_002685_160 0.1561958348 - - leucine-rich repeat protein, putative [Ricinus communis]
18 Hb_019026_050 0.1587837866 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000020_030 0.1589239444 - - protein binding protein, putative [Ricinus communis]
20 Hb_000685_020 0.1593863171 - - PREDICTED: long chain acyl-CoA synthetase 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_000483_130 Hb_000483_130 Hb_003226_030 Hb_003226_030 Hb_000483_130--Hb_003226_030 Hb_000095_070 Hb_000095_070 Hb_000483_130--Hb_000095_070 Hb_000362_050 Hb_000362_050 Hb_000483_130--Hb_000362_050 Hb_073808_010 Hb_073808_010 Hb_000483_130--Hb_073808_010 Hb_001486_060 Hb_001486_060 Hb_000483_130--Hb_001486_060 Hb_007943_020 Hb_007943_020 Hb_000483_130--Hb_007943_020 Hb_012743_020 Hb_012743_020 Hb_003226_030--Hb_012743_020 Hb_002000_130 Hb_002000_130 Hb_003226_030--Hb_002000_130 Hb_003226_030--Hb_007943_020 Hb_001143_140 Hb_001143_140 Hb_003226_030--Hb_001143_140 Hb_005357_020 Hb_005357_020 Hb_003226_030--Hb_005357_020 Hb_008092_020 Hb_008092_020 Hb_003226_030--Hb_008092_020 Hb_002814_050 Hb_002814_050 Hb_000095_070--Hb_002814_050 Hb_060198_010 Hb_060198_010 Hb_000095_070--Hb_060198_010 Hb_000347_420 Hb_000347_420 Hb_000095_070--Hb_000347_420 Hb_001728_130 Hb_001728_130 Hb_000095_070--Hb_001728_130 Hb_000959_120 Hb_000959_120 Hb_000095_070--Hb_000959_120 Hb_004307_070 Hb_004307_070 Hb_000095_070--Hb_004307_070 Hb_000210_140 Hb_000210_140 Hb_000362_050--Hb_000210_140 Hb_006153_130 Hb_006153_130 Hb_000362_050--Hb_006153_130 Hb_002119_070 Hb_002119_070 Hb_000362_050--Hb_002119_070 Hb_000362_050--Hb_007943_020 Hb_002970_070 Hb_002970_070 Hb_000362_050--Hb_002970_070 Hb_001189_100 Hb_001189_100 Hb_073808_010--Hb_001189_100 Hb_002671_060 Hb_002671_060 Hb_073808_010--Hb_002671_060 Hb_000085_380 Hb_000085_380 Hb_073808_010--Hb_000085_380 Hb_073808_010--Hb_001728_130 Hb_001247_270 Hb_001247_270 Hb_073808_010--Hb_001247_270 Hb_042202_020 Hb_042202_020 Hb_073808_010--Hb_042202_020 Hb_000818_080 Hb_000818_080 Hb_001486_060--Hb_000818_080 Hb_000793_040 Hb_000793_040 Hb_001486_060--Hb_000793_040 Hb_002026_080 Hb_002026_080 Hb_001486_060--Hb_002026_080 Hb_086336_010 Hb_086336_010 Hb_001486_060--Hb_086336_010 Hb_004657_080 Hb_004657_080 Hb_001486_060--Hb_004657_080 Hb_007943_020--Hb_000347_420 Hb_029260_010 Hb_029260_010 Hb_007943_020--Hb_029260_010 Hb_000020_030 Hb_000020_030 Hb_007943_020--Hb_000020_030 Hb_002042_160 Hb_002042_160 Hb_007943_020--Hb_002042_160 Hb_138606_020 Hb_138606_020 Hb_007943_020--Hb_138606_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0402097 1.33421 0.605551 2.21161 0.0392072 0.252146
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0547335 1.68882 1.09844

CAGE analysis