Hb_002119_070

Information

Type transcription factor
Description TF Family: C2H2
Location Contig2119: 123627-128535
Sequence    

Annotation

kegg
ID rcu:RCOM_1149760
description zinc finger protein, putative
nr
ID XP_002527542.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q39263
description Zinc finger protein 4 OS=Arabidopsis thaliana GN=ZFP4 PE=2 SV=2
trembl
ID B9SNH3
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1149760 PE=4 SV=1
Gene Ontology
ID GO:0003700
description zinc finger protein 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21923: 123697-128746 , PASA_asmbl_21925: 125363-125791
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002119_070 0.0 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
2 Hb_010605_010 0.134036991 desease resistance Gene Name: NB-ARC Disease resistance protein RPM1, putative [Ricinus communis]
3 Hb_004531_110 0.1489832448 - - PREDICTED: aquaporin TIP2-1 [Jatropha curcas]
4 Hb_000362_050 0.151491009 transcription factor TF Family: NOZZLE PREDICTED: uncharacterized protein LOC105635737 [Jatropha curcas]
5 Hb_002928_120 0.1516145631 - - 1,4-alpha-glucan branching enzyme [Manihot esculenta]
6 Hb_001071_060 0.1520665681 - - Trehalose phosphatase/synthase 5 isoform 1 [Theobroma cacao]
7 Hb_151706_010 0.1542329379 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
8 Hb_004316_030 0.1548407855 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
9 Hb_025432_010 0.1563408682 - - hypothetical protein JCGZ_21627 [Jatropha curcas]
10 Hb_000793_040 0.1568255854 - - PREDICTED: transcription factor LHW [Jatropha curcas]
11 Hb_001832_210 0.1593187621 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
12 Hb_169620_010 0.1599860302 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
13 Hb_000778_020 0.16017008 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
14 Hb_001486_060 0.1605638883 - - PREDICTED: uncharacterized protein LOC105632622 [Jatropha curcas]
15 Hb_106136_010 0.1614589413 - - Disease resistance protein RPS5, putative [Ricinus communis]
16 Hb_000197_230 0.1631361707 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
17 Hb_000483_130 0.1672610227 - - PREDICTED: uncharacterized protein LOC105644062 isoform X1 [Jatropha curcas]
18 Hb_001178_080 0.1691662993 - - PREDICTED: protein kinase PVPK-1 [Jatropha curcas]
19 Hb_000540_040 0.1721130931 - - PREDICTED: chitinase 2 [Amborella trichopoda]
20 Hb_002928_180 0.1724615891 - - catalase CAT1 [Manihot esculenta]

Gene co-expression network

sample Hb_002119_070 Hb_002119_070 Hb_010605_010 Hb_010605_010 Hb_002119_070--Hb_010605_010 Hb_004531_110 Hb_004531_110 Hb_002119_070--Hb_004531_110 Hb_000362_050 Hb_000362_050 Hb_002119_070--Hb_000362_050 Hb_002928_120 Hb_002928_120 Hb_002119_070--Hb_002928_120 Hb_001071_060 Hb_001071_060 Hb_002119_070--Hb_001071_060 Hb_151706_010 Hb_151706_010 Hb_002119_070--Hb_151706_010 Hb_000197_230 Hb_000197_230 Hb_010605_010--Hb_000197_230 Hb_163658_010 Hb_163658_010 Hb_010605_010--Hb_163658_010 Hb_001408_150 Hb_001408_150 Hb_010605_010--Hb_001408_150 Hb_010605_010--Hb_001071_060 Hb_001391_100 Hb_001391_100 Hb_010605_010--Hb_001391_100 Hb_004531_110--Hb_001071_060 Hb_001832_210 Hb_001832_210 Hb_004531_110--Hb_001832_210 Hb_048643_010 Hb_048643_010 Hb_004531_110--Hb_048643_010 Hb_001148_040 Hb_001148_040 Hb_004531_110--Hb_001148_040 Hb_004531_110--Hb_002928_120 Hb_000483_130 Hb_000483_130 Hb_000362_050--Hb_000483_130 Hb_000210_140 Hb_000210_140 Hb_000362_050--Hb_000210_140 Hb_006153_130 Hb_006153_130 Hb_000362_050--Hb_006153_130 Hb_007943_020 Hb_007943_020 Hb_000362_050--Hb_007943_020 Hb_002970_070 Hb_002970_070 Hb_000362_050--Hb_002970_070 Hb_000793_040 Hb_000793_040 Hb_002928_120--Hb_000793_040 Hb_002928_180 Hb_002928_180 Hb_002928_120--Hb_002928_180 Hb_001021_030 Hb_001021_030 Hb_002928_120--Hb_001021_030 Hb_025432_010 Hb_025432_010 Hb_002928_120--Hb_025432_010 Hb_000429_110 Hb_000429_110 Hb_002928_120--Hb_000429_110 Hb_000236_110 Hb_000236_110 Hb_002928_120--Hb_000236_110 Hb_001071_060--Hb_001832_210 Hb_001071_060--Hb_000197_230 Hb_064047_010 Hb_064047_010 Hb_001071_060--Hb_064047_010 Hb_000778_020 Hb_000778_020 Hb_001071_060--Hb_000778_020 Hb_002324_040 Hb_002324_040 Hb_001071_060--Hb_002324_040 Hb_004316_030 Hb_004316_030 Hb_151706_010--Hb_004316_030 Hb_053125_010 Hb_053125_010 Hb_151706_010--Hb_053125_010 Hb_117168_010 Hb_117168_010 Hb_151706_010--Hb_117168_010 Hb_136880_010 Hb_136880_010 Hb_151706_010--Hb_136880_010 Hb_000977_010 Hb_000977_010 Hb_151706_010--Hb_000977_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.08864 38.6328 7.09274 39.0941 1.86969 10.6337
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.195332 1.33115 1.11406 35.6109 12.7778

CAGE analysis