Hb_001021_030

Information

Type -
Description -
Location Contig1021: 15036-16360
Sequence    

Annotation

kegg
ID rcu:RCOM_1439660
description chloroplast-targeted copper chaperone, putative
nr
ID XP_002531871.1
description chloroplast-targeted copper chaperone, putative [Ricinus communis]
swissprot
ID Q9SZN7
description Heavy metal-associated isoprenylated plant protein 26 OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1
trembl
ID B9T0V2
description Chloroplast-targeted copper chaperone, putative OS=Ricinus communis GN=RCOM_1439660 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001021_030 0.0 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
2 Hb_002928_120 0.119160834 - - 1,4-alpha-glucan branching enzyme [Manihot esculenta]
3 Hb_003576_050 0.1351594447 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
4 Hb_004316_030 0.1416685003 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
5 Hb_029977_010 0.1463071898 - - catalytic, putative [Ricinus communis]
6 Hb_009823_010 0.1523125477 - - PREDICTED: uncharacterized protein LOC105633096 [Jatropha curcas]
7 Hb_000041_290 0.1536429252 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
8 Hb_001408_050 0.1553241567 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000976_440 0.1573487358 - - UDP-glucosyltransferase, putative [Ricinus communis]
10 Hb_001341_200 0.1582744162 transcription factor TF Family: ARF PREDICTED: auxin response factor 4 [Jatropha curcas]
11 Hb_000793_040 0.1591277615 - - PREDICTED: transcription factor LHW [Jatropha curcas]
12 Hb_005181_180 0.1602561119 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002026_080 0.1612999383 desease resistance Gene Name: TIR_2 nucleoside-triphosphatase, putative [Ricinus communis]
14 Hb_002662_090 0.1686029242 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
15 Hb_002551_090 0.1695981026 - - hypothetical protein JCGZ_17224 [Jatropha curcas]
16 Hb_003453_030 0.1697163768 - - hypothetical protein JCGZ_26893 [Jatropha curcas]
17 Hb_000762_070 0.1711799566 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]
18 Hb_001900_060 0.1719661634 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
19 Hb_000429_110 0.1727819268 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein WIP2-like [Populus euphratica]
20 Hb_010174_190 0.1747448319 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]

Gene co-expression network

sample Hb_001021_030 Hb_001021_030 Hb_002928_120 Hb_002928_120 Hb_001021_030--Hb_002928_120 Hb_003576_050 Hb_003576_050 Hb_001021_030--Hb_003576_050 Hb_004316_030 Hb_004316_030 Hb_001021_030--Hb_004316_030 Hb_029977_010 Hb_029977_010 Hb_001021_030--Hb_029977_010 Hb_009823_010 Hb_009823_010 Hb_001021_030--Hb_009823_010 Hb_000041_290 Hb_000041_290 Hb_001021_030--Hb_000041_290 Hb_000793_040 Hb_000793_040 Hb_002928_120--Hb_000793_040 Hb_002928_180 Hb_002928_180 Hb_002928_120--Hb_002928_180 Hb_025432_010 Hb_025432_010 Hb_002928_120--Hb_025432_010 Hb_000429_110 Hb_000429_110 Hb_002928_120--Hb_000429_110 Hb_000236_110 Hb_000236_110 Hb_002928_120--Hb_000236_110 Hb_003576_050--Hb_009823_010 Hb_003517_020 Hb_003517_020 Hb_003576_050--Hb_003517_020 Hb_001408_050 Hb_001408_050 Hb_003576_050--Hb_001408_050 Hb_000313_370 Hb_000313_370 Hb_003576_050--Hb_000313_370 Hb_001248_030 Hb_001248_030 Hb_003576_050--Hb_001248_030 Hb_000928_040 Hb_000928_040 Hb_003576_050--Hb_000928_040 Hb_004316_030--Hb_029977_010 Hb_000762_070 Hb_000762_070 Hb_004316_030--Hb_000762_070 Hb_004316_030--Hb_000793_040 Hb_004316_030--Hb_002928_120 Hb_002119_070 Hb_002119_070 Hb_004316_030--Hb_002119_070 Hb_001493_020 Hb_001493_020 Hb_029977_010--Hb_001493_020 Hb_001564_090 Hb_001564_090 Hb_029977_010--Hb_001564_090 Hb_002026_080 Hb_002026_080 Hb_029977_010--Hb_002026_080 Hb_184942_010 Hb_184942_010 Hb_029977_010--Hb_184942_010 Hb_000976_440 Hb_000976_440 Hb_009823_010--Hb_000976_440 Hb_009823_010--Hb_001408_050 Hb_000181_160 Hb_000181_160 Hb_009823_010--Hb_000181_160 Hb_000638_090 Hb_000638_090 Hb_009823_010--Hb_000638_090 Hb_000098_310 Hb_000098_310 Hb_009823_010--Hb_000098_310 Hb_001369_620 Hb_001369_620 Hb_000041_290--Hb_001369_620 Hb_002597_010 Hb_002597_010 Hb_000041_290--Hb_002597_010 Hb_001959_030 Hb_001959_030 Hb_000041_290--Hb_001959_030 Hb_002016_020 Hb_002016_020 Hb_000041_290--Hb_002016_020 Hb_080147_060 Hb_080147_060 Hb_000041_290--Hb_080147_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.60381 8.22287 1.95663 9.84411 1.14873 0.622725
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.526195 1.03473 0.255766 16.6701 1.92004

CAGE analysis