Hb_000762_070

Information

Type transcription factor
Description TF Family: MYB
Location Contig762: 75954-78876
Sequence    

Annotation

kegg
ID tcc:TCM_016886
description Myb domain protein 66, putative
nr
ID XP_012081531.1
description PREDICTED: transcription factor WER-like [Jatropha curcas]
swissprot
ID Q9SEI0
description Transcription factor WER OS=Arabidopsis thaliana GN=WER PE=1 SV=1
trembl
ID A0A067LKV6
description MYB family protein OS=Jatropha curcas GN=JCGZ_09589 PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcription factor wer-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57301: 75962-78781
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000762_070 0.0 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]
2 Hb_000976_440 0.1341326551 - - UDP-glucosyltransferase, putative [Ricinus communis]
3 Hb_001408_050 0.1360839978 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004316_030 0.1435721983 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
5 Hb_009823_010 0.1510154969 - - PREDICTED: uncharacterized protein LOC105633096 [Jatropha curcas]
6 Hb_003576_050 0.1550570982 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
7 Hb_164010_090 0.1629645042 - - cellulose synthase, putative [Ricinus communis]
8 Hb_001248_030 0.1681390773 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_003453_030 0.1698358387 - - hypothetical protein JCGZ_26893 [Jatropha curcas]
10 Hb_001021_030 0.1711799566 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
11 Hb_003052_120 0.1726351788 - - hypothetical protein POPTR_0008s10970g [Populus trichocarpa]
12 Hb_011114_030 0.1765312549 - - PREDICTED: probable carboxylesterase 15 [Jatropha curcas]
13 Hb_003299_010 0.1799642042 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
14 Hb_000181_160 0.1806827457 - - PREDICTED: uncharacterized protein LOC105637575 isoform X2 [Jatropha curcas]
15 Hb_001678_030 0.1807168569 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Jatropha curcas]
16 Hb_002783_320 0.1812466179 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FC isoform X1 [Jatropha curcas]
17 Hb_000189_120 0.182890269 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like isoform X5 [Jatropha curcas]
18 Hb_000638_090 0.1837373689 - - ABC transporter family protein [Hevea brasiliensis]
19 Hb_012807_060 0.1845874486 - - ABC transporter family protein [Hevea brasiliensis]
20 Hb_002551_090 0.1847661898 - - hypothetical protein JCGZ_17224 [Jatropha curcas]

Gene co-expression network

sample Hb_000762_070 Hb_000762_070 Hb_000976_440 Hb_000976_440 Hb_000762_070--Hb_000976_440 Hb_001408_050 Hb_001408_050 Hb_000762_070--Hb_001408_050 Hb_004316_030 Hb_004316_030 Hb_000762_070--Hb_004316_030 Hb_009823_010 Hb_009823_010 Hb_000762_070--Hb_009823_010 Hb_003576_050 Hb_003576_050 Hb_000762_070--Hb_003576_050 Hb_164010_090 Hb_164010_090 Hb_000762_070--Hb_164010_090 Hb_000976_440--Hb_009823_010 Hb_000976_440--Hb_001408_050 Hb_002072_020 Hb_002072_020 Hb_000976_440--Hb_002072_020 Hb_000976_440--Hb_003576_050 Hb_001678_030 Hb_001678_030 Hb_000976_440--Hb_001678_030 Hb_003453_030 Hb_003453_030 Hb_001408_050--Hb_003453_030 Hb_001408_050--Hb_009823_010 Hb_000181_160 Hb_000181_160 Hb_001408_050--Hb_000181_160 Hb_001408_050--Hb_001678_030 Hb_001408_050--Hb_003576_050 Hb_000638_090 Hb_000638_090 Hb_001408_050--Hb_000638_090 Hb_029977_010 Hb_029977_010 Hb_004316_030--Hb_029977_010 Hb_001021_030 Hb_001021_030 Hb_004316_030--Hb_001021_030 Hb_000793_040 Hb_000793_040 Hb_004316_030--Hb_000793_040 Hb_002928_120 Hb_002928_120 Hb_004316_030--Hb_002928_120 Hb_002119_070 Hb_002119_070 Hb_004316_030--Hb_002119_070 Hb_009823_010--Hb_003576_050 Hb_009823_010--Hb_000181_160 Hb_009823_010--Hb_000638_090 Hb_000098_310 Hb_000098_310 Hb_009823_010--Hb_000098_310 Hb_003517_020 Hb_003517_020 Hb_003576_050--Hb_003517_020 Hb_000313_370 Hb_000313_370 Hb_003576_050--Hb_000313_370 Hb_001248_030 Hb_001248_030 Hb_003576_050--Hb_001248_030 Hb_000928_040 Hb_000928_040 Hb_003576_050--Hb_000928_040 Hb_000141_220 Hb_000141_220 Hb_164010_090--Hb_000141_220 Hb_004195_170 Hb_004195_170 Hb_164010_090--Hb_004195_170 Hb_005380_040 Hb_005380_040 Hb_164010_090--Hb_005380_040 Hb_017866_020 Hb_017866_020 Hb_164010_090--Hb_017866_020 Hb_000589_180 Hb_000589_180 Hb_164010_090--Hb_000589_180 Hb_000844_010 Hb_000844_010 Hb_164010_090--Hb_000844_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.134362 2.53218 0.233594 1.35653 0.0578178 0.355691
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.068509 0.215471 0 3.55539 0.216019

CAGE analysis