Hb_001678_030

Information

Type desease resistance
Description Gene Name: TIR
Location Contig1678: 14699-26868
Sequence    

Annotation

kegg
ID cic:CICLE_v10014074mg
description hypothetical protein
nr
ID XP_012067299.1
description PREDICTED: TMV resistance protein N-like [Jatropha curcas]
swissprot
ID O82500
description Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1
trembl
ID V4U0N7
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10014074mg PE=4 SV=1
Gene Ontology
ID GO:0005515
description tmv resistance protein n-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15587: 15279-15752 , PASA_asmbl_15588: 17847-18518
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001678_030 0.0 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Jatropha curcas]
2 Hb_000616_050 0.1183566309 - - PREDICTED: uncharacterized protein LOC105639906 [Jatropha curcas]
3 Hb_001408_050 0.1190309169 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000029_370 0.1247120273 - - multidrug resistance pump, putative [Ricinus communis]
5 Hb_001329_040 0.1254092233 - - hypothetical protein RCOM_1345340 [Ricinus communis]
6 Hb_001838_050 0.129183097 - - hypothetical protein B456_007G218500 [Gossypium raimondii]
7 Hb_032050_050 0.1321396823 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
8 Hb_002671_110 0.1325632842 - - PREDICTED: remorin-like [Jatropha curcas]
9 Hb_001405_100 0.1326068339 - - PREDICTED: lysM domain receptor-like kinase 4 [Jatropha curcas]
10 Hb_003399_030 0.1326179889 - - PREDICTED: isoflavone 2'-hydroxylase-like [Jatropha curcas]
11 Hb_142332_010 0.1329529612 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
12 Hb_010326_030 0.1334837268 - - PREDICTED: abscisic acid 8'-hydroxylase 4-like [Jatropha curcas]
13 Hb_000237_150 0.1368858566 - - Epoxide hydrolase 2 [Morus notabilis]
14 Hb_000181_160 0.1401822557 - - PREDICTED: uncharacterized protein LOC105637575 isoform X2 [Jatropha curcas]
15 Hb_000852_050 0.1407208297 - - hypothetical protein POPTR_0018s02450g [Populus trichocarpa]
16 Hb_000976_440 0.1432402715 - - UDP-glucosyltransferase, putative [Ricinus communis]
17 Hb_003031_030 0.1454093737 - - hypothetical protein JCGZ_21288 [Jatropha curcas]
18 Hb_000238_060 0.1467624945 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
19 Hb_000984_080 0.1480013107 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
20 Hb_055305_010 0.1485102938 - - Disease resistance protein RFL1, putative [Ricinus communis]

Gene co-expression network

sample Hb_001678_030 Hb_001678_030 Hb_000616_050 Hb_000616_050 Hb_001678_030--Hb_000616_050 Hb_001408_050 Hb_001408_050 Hb_001678_030--Hb_001408_050 Hb_000029_370 Hb_000029_370 Hb_001678_030--Hb_000029_370 Hb_001329_040 Hb_001329_040 Hb_001678_030--Hb_001329_040 Hb_001838_050 Hb_001838_050 Hb_001678_030--Hb_001838_050 Hb_032050_050 Hb_032050_050 Hb_001678_030--Hb_032050_050 Hb_000237_150 Hb_000237_150 Hb_000616_050--Hb_000237_150 Hb_019229_020 Hb_019229_020 Hb_000616_050--Hb_019229_020 Hb_003031_030 Hb_003031_030 Hb_000616_050--Hb_003031_030 Hb_000649_030 Hb_000649_030 Hb_000616_050--Hb_000649_030 Hb_000616_050--Hb_001838_050 Hb_000852_050 Hb_000852_050 Hb_000616_050--Hb_000852_050 Hb_003453_030 Hb_003453_030 Hb_001408_050--Hb_003453_030 Hb_009823_010 Hb_009823_010 Hb_001408_050--Hb_009823_010 Hb_000181_160 Hb_000181_160 Hb_001408_050--Hb_000181_160 Hb_003576_050 Hb_003576_050 Hb_001408_050--Hb_003576_050 Hb_000638_090 Hb_000638_090 Hb_001408_050--Hb_000638_090 Hb_005237_040 Hb_005237_040 Hb_000029_370--Hb_005237_040 Hb_014037_010 Hb_014037_010 Hb_000029_370--Hb_014037_010 Hb_000236_050 Hb_000236_050 Hb_000029_370--Hb_000236_050 Hb_002150_010 Hb_002150_010 Hb_000029_370--Hb_002150_010 Hb_001221_480 Hb_001221_480 Hb_000029_370--Hb_001221_480 Hb_001638_110 Hb_001638_110 Hb_001329_040--Hb_001638_110 Hb_005228_170 Hb_005228_170 Hb_001329_040--Hb_005228_170 Hb_010326_030 Hb_010326_030 Hb_001329_040--Hb_010326_030 Hb_002671_110 Hb_002671_110 Hb_001329_040--Hb_002671_110 Hb_001329_040--Hb_000616_050 Hb_004574_010 Hb_004574_010 Hb_001838_050--Hb_004574_010 Hb_001838_050--Hb_003031_030 Hb_001838_050--Hb_000237_150 Hb_088916_010 Hb_088916_010 Hb_001838_050--Hb_088916_010 Hb_001693_020 Hb_001693_020 Hb_001838_050--Hb_001693_020 Hb_000984_080 Hb_000984_080 Hb_032050_050--Hb_000984_080 Hb_002110_270 Hb_002110_270 Hb_032050_050--Hb_002110_270 Hb_032050_050--Hb_002150_010 Hb_002900_070 Hb_002900_070 Hb_032050_050--Hb_002900_070 Hb_006006_070 Hb_006006_070 Hb_032050_050--Hb_006006_070 Hb_076895_020 Hb_076895_020 Hb_032050_050--Hb_076895_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0450313 2.01256 0.232459 1.21693 0.0419912 0.0532535
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.127725 0.0574391 0.0276307 5.16662 0.185011

CAGE analysis