Hb_001329_040

Information

Type -
Description -
Location Contig1329: 26505-26864
Sequence    

Annotation

kegg
ID rcu:RCOM_1345340
description hypothetical protein
nr
ID XP_002515222.1
description hypothetical protein RCOM_1345340 [Ricinus communis]
swissprot
ID Q9FNZ5
description Protein NIM1-INTERACTING 1 OS=Arabidopsis thaliana GN=NIMIN-1 PE=1 SV=1
trembl
ID B9RN83
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1345340 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09380: 26301-26934
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001329_040 0.0 - - hypothetical protein RCOM_1345340 [Ricinus communis]
2 Hb_001678_030 0.1254092233 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Jatropha curcas]
3 Hb_001638_110 0.1276556374 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005228_170 0.1368820167 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
5 Hb_010326_030 0.1394531702 - - PREDICTED: abscisic acid 8'-hydroxylase 4-like [Jatropha curcas]
6 Hb_002671_110 0.1400184902 - - PREDICTED: remorin-like [Jatropha curcas]
7 Hb_000616_050 0.1417756443 - - PREDICTED: uncharacterized protein LOC105639906 [Jatropha curcas]
8 Hb_019229_020 0.1519608152 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
9 Hb_000238_060 0.1573498778 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
10 Hb_000237_150 0.1584831726 - - Epoxide hydrolase 2 [Morus notabilis]
11 Hb_000081_020 0.1612525278 - - PREDICTED: protein NRT1/ PTR FAMILY 1.1-like [Camelina sativa]
12 Hb_002003_020 0.1629792765 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
13 Hb_000487_140 0.1638908771 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
14 Hb_000057_010 0.1649849685 - - PREDICTED: probable protein phosphatase 2C 59 [Jatropha curcas]
15 Hb_002081_040 0.1649979859 - - PREDICTED: nucleobase-ascorbate transporter 4 [Jatropha curcas]
16 Hb_009515_010 0.1675878102 transcription factor TF Family: HB hypothetical protein JCGZ_15302 [Jatropha curcas]
17 Hb_000334_250 0.1680609496 - - Polygalacturonase precursor, putative [Ricinus communis]
18 Hb_001405_100 0.1684136089 - - PREDICTED: lysM domain receptor-like kinase 4 [Jatropha curcas]
19 Hb_012762_070 0.1685713282 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HOX3 [Jatropha curcas]
20 Hb_000000_060 0.1687409787 - - PREDICTED: wall-associated receptor kinase-like 14 [Jatropha curcas]

Gene co-expression network

sample Hb_001329_040 Hb_001329_040 Hb_001678_030 Hb_001678_030 Hb_001329_040--Hb_001678_030 Hb_001638_110 Hb_001638_110 Hb_001329_040--Hb_001638_110 Hb_005228_170 Hb_005228_170 Hb_001329_040--Hb_005228_170 Hb_010326_030 Hb_010326_030 Hb_001329_040--Hb_010326_030 Hb_002671_110 Hb_002671_110 Hb_001329_040--Hb_002671_110 Hb_000616_050 Hb_000616_050 Hb_001329_040--Hb_000616_050 Hb_001678_030--Hb_000616_050 Hb_001408_050 Hb_001408_050 Hb_001678_030--Hb_001408_050 Hb_000029_370 Hb_000029_370 Hb_001678_030--Hb_000029_370 Hb_001838_050 Hb_001838_050 Hb_001678_030--Hb_001838_050 Hb_032050_050 Hb_032050_050 Hb_001678_030--Hb_032050_050 Hb_019229_020 Hb_019229_020 Hb_001638_110--Hb_019229_020 Hb_000238_060 Hb_000238_060 Hb_001638_110--Hb_000238_060 Hb_001638_110--Hb_005228_170 Hb_001638_110--Hb_002671_110 Hb_000852_050 Hb_000852_050 Hb_001638_110--Hb_000852_050 Hb_000649_030 Hb_000649_030 Hb_001638_110--Hb_000649_030 Hb_002081_040 Hb_002081_040 Hb_005228_170--Hb_002081_040 Hb_005228_170--Hb_002671_110 Hb_005218_070 Hb_005218_070 Hb_005228_170--Hb_005218_070 Hb_000302_060 Hb_000302_060 Hb_005228_170--Hb_000302_060 Hb_161393_010 Hb_161393_010 Hb_005228_170--Hb_161393_010 Hb_002204_030 Hb_002204_030 Hb_005228_170--Hb_002204_030 Hb_094637_010 Hb_094637_010 Hb_010326_030--Hb_094637_010 Hb_010326_030--Hb_001678_030 Hb_000487_140 Hb_000487_140 Hb_010326_030--Hb_000487_140 Hb_001158_080 Hb_001158_080 Hb_010326_030--Hb_001158_080 Hb_000934_290 Hb_000934_290 Hb_010326_030--Hb_000934_290 Hb_010326_030--Hb_001638_110 Hb_002671_110--Hb_000238_060 Hb_002671_110--Hb_005218_070 Hb_000237_150 Hb_000237_150 Hb_002671_110--Hb_000237_150 Hb_001405_100 Hb_001405_100 Hb_002671_110--Hb_001405_100 Hb_002671_110--Hb_002081_040 Hb_000616_050--Hb_000237_150 Hb_000616_050--Hb_019229_020 Hb_003031_030 Hb_003031_030 Hb_000616_050--Hb_003031_030 Hb_000616_050--Hb_000649_030 Hb_000616_050--Hb_001838_050 Hb_000616_050--Hb_000852_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.103356 5.21335 0.165014 3.23519 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.492411 0 0 11.4789 0.326837

CAGE analysis